Selected Publications

Full publication list here.
Google Scholar here.


Hybridization breaks species barriers in long-term coevolution of a cyanobacterial population

Hybridization breaks species barriers in long-term coevolution of a cyanobacterial population

Gabriel Birzu, Harihara Subrahmaniam Muralidharan, Danielle Goudeau, Rex R. Malmstrom, Daniel S. Fisher, Devaki Bhaya, bioRxiv, 2023

external link


Spatiotemporal ecological chaos enables gradual evolutionary diversification without niches or tradeoffs

Spatiotemporal ecological chaos enables gradual evolutionary diversification without niches or tradeoffs

Aditya Mahadevan, Michael Pearce, Daniel S. Fisher, eLife, 2023

external link


Population genetics of polymorphism and divergence in rapidly evolving populations

Population genetics of polymorphism and divergence in rapidly evolving populations

Matthew Melissa, Benjamin Good, Daniel S. Fisher, Michael Desai, Genetics, 2022

pdf | external link


Inevitability of Red Queen evolution driven by organismic complexity and simple feedback via environmental modification

Inevitability of Red Queen evolution driven by organismic complexity and simple feedback via environmental modification

Daniel S. Fisher, bioRxiv, 2021

external link


A model for the interplay between plastic tradeoffs and evolution in changing environments

A model for the interplay between plastic tradeoffs and evolution in changing environments

Mikhail Tikhonov, Shamit Kachru, Daniel S. Fisher, Proceedings of the National Academy of Sciences, 2020

pdf | external link


Stabilization of extensive fine-scale diversity by ecologically driven spatiotemporal chaos

Stabilization of extensive fine-scale diversity by ecologically driven spatiotemporal chaos

Michael Pearce, Atish Agarwala, Daniel S. Fisher, Proceedings of the National Academy of Sciences, 2020

pdf | external link


The evolutionary dynamics and fitness landscape of clonal hematopoiesis

The evolutionary dynamics and fitness landscape of clonal hematopoiesis

Caroline J. Watson, Alana Papula, Yeuk P. G. Poon, Wing H. Wong, Andrew L. Young, Todd E. Druley, Daniel S. Fisher, Jamie Blundell, Science, 2020

pdf | external link


Adaptive walks on high-dimensional fitness landscapes and seascapes with distance-dependent statistics

Adaptive walks on high-dimensional fitness landscapes and seascapes with distance-dependent statistics

Atish Agarwala, Daniel S. Fisher, Theoretical population biology, 2019

pdf | external link


The dynamics of adaptive genetic diversity during the early stages of clonal evolution

The dynamics of adaptive genetic diversity during the early stages of clonal evolution

Jamie Blundell, Katja Schwartz, Danielle Francois, Daniel S. Fisher, Gavin Sherlock, Sasha F Levy, Nature ecology & evolution, 2019

pdf | external link


Emergent elasticity in the neural code for space

Emergent elasticity in the neural code for space

Sam Ocko, Kiah Hardcastle, Lisa M. Giocomo, Surya Ganguli, Proceedings of the National Academy of Sciences, 2018

pdf | external link


Hidden complexity of yeast adaptation under simple evolutionary conditions

Hidden complexity of yeast adaptation under simple evolutionary conditions

Yuping Li, Sandeep Venkataram, Atish Agarwala, Barbara Dunn, Dmitri A Petrov, Gavin Sherlock, Daniel S. Fisher, Current Biology, 2018

pdf | external link


Rapid adaptation in large populations with very rare sex: scalings and spontaneous oscillations

Rapid adaptation in large populations with very rare sex: scalings and spontaneous oscillations

Michael Pearce, Daniel S. Fisher, Theoretical Population Biology, 2019

pdf | external link


Development of a Comprehensive Genotype-to-Fitness Map of Adaptation-Driving Mutations in Yeast

Development of a Comprehensive Genotype-to-Fitness Map of Adaptation-Driving Mutations in Yeast

Sandeep Venkataram, Barbara Dunn, Yuping Li, Atish Agarwala, Jessica Chang, Emily R. Ebel, Kerry Geiler-Samerotte, Lucas Hérissant, Jamie Blundell, Sasha F. Levy, Daniel S. Fisher, Gavin Sherlock, Dmitri A. Petrov, Cell, 2016

pdf | external link


Fine-scale diversity and extensive recombination in a quasisexual bacterial population occupying a broad niche

Fine-scale diversity and extensive recombination in a quasisexual bacterial population occupying a broad niche

Michael Rosen, Michelle Davison, Devaki Bhaya, Daniel S. Fisher, Science, 2015

pdf | external link


Quantitative evolutionary dynamics using high-resolution lineage tracking

Quantitative evolutionary dynamics using high-resolution lineage tracking

Sasha F. Levy, Jamie Blundell, Sandeep Venkataram, Dmitri A. Petrov, Daniel S. Fisher, Gavin Sherlock, Nature, 2015

pdf | external link


Acceleration of evolutionary spread by long-range dispersal

Acceleration of evolutionary spread by long-range dispersal

Oskar Hallatschek, Daniel S. Fisher, Proceedings of the National Academy of Sciences, 2014

pdf | external link


Asexual Evolution Waves: Fluctuations and Universality

Asexual Evolution Waves: Fluctuations and Universality

Daniel S. Fisher, Journal of Statistical Mechanics: Theory and Experiment, 2013

pdf | external link