Publications

Garry P. Nolan, Ph.D. and colleagues

{ Publications | Chapters in Books | Edited Books }

Nolan GP . (2008). Featured Scientist Interview by ScienceWatch.com. Tracking Trends and Performance in Basic Research. April 2008. Interview Link

Publications

(1) G.P. Nolan. (1978). On the Foraging Strategies of Carnivorous Plants II. Carnivorous Plant Newsletter, Volume 7: 79-81.

Okay, so this is an article I published when I was a teenager about these cool outer tentacles of Drosera burmanii that I showed were sensitive to a protein-motion mixture (and not motion alone). I postulated they were critical to push escaping insect victims back into the center of the trap where they are to be digested.

There is a lot to learn from something like this regarding students methinks....

Recent Publications:

The complete Nolan Lab publication list can be found here.

Bodenmiller B, Zunder ER, Finck R, Chen TJ, Savig ES, Bruggner RV, Simonds EF, Bendall SC, Sachs K, Krutzik PO, Nolan GP. (2012) Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators. Nat Biotechnol. 2012 Aug 19; doi: 10.1038/nbt.2317. [Epub ahead of print]. PMID: 22902532. PUBMED Abstract

Kinoshita SM, Krutzik PO, Nolan GP. (2012) COP9 Signalosome Component JAB1/CSN5 Is Necessary for T Cell Signaling through LFA-1 and HIV-1 Replication. PLoS One. 2012;7(7):e41725. Epub 2012 Jul 24. PMID: 22911848. PUBMED Abstract

Linderman MD, Bjornson Z, Simonds EF, Qiu P, Bruggner R, Sheode K, Meng TH, Plevritis SK, Nolan GP. (2012) CytoSPADE: High-Performance Analysis and Visualization of High-Dimensional Cytometry Data. Bioinformatics. 2012 Jul 10. [Epub ahead of print] PMID: 22782546. PUBMED Abstract

Bendall SC, Nolan GP. (2012) From single cells to deep phenotypes in cancer. Nat Biotechnol. 2012 Jul 10;30(7):639-647. doi: 10.1038/nbt.283. [Epub ahead of print] PMID: 27781693. PUBMED Abstract

Behbehani GK, Bendall SC, Clutter MR, Fantl WJ, Nolan GP. (2012) Single-cell mass cytometry adapted to measurements of the cell cycle. Cytometry A. 2012 Jun 12. doi:0.1002/cyto.a.22075. [Epub ahead of print] PMID: 22693166. PMC in Process. PUBMED Abstract

Bendall SC, Nolan GP, Roederer M, Chattopadhyay PK. (2012) A deep profiler's guide to cytometry. Trends Immunol. 2012 Apr 2. [Epub ahead of print] PMID: 22476049. NIHMS363002. PUBMED Abstract

Fienberg HG, Simonds EF, Fantl WJ, Nolan GP, Bodenmiller B. (2012) A platinum-based covalent viability reagent for single-cell mass cytometry. Cytometry A. 2012 Jun;81(6):467-75. doi: 10.1002/cyto.a.22067. Epub 2012 May 10. PMID: 22577098. PMC in Process. PUBMED Abstract

Gibbs KD Jr, Jager A, Crespo O, Goltsev Y, Trejo A, Richard CE, Nolan GP. (2012) Decoupling of tumor-initiating activity from stable immunophenotype in HoxA9-Meis1-driven AML. Cell Stem Cell. 2012 Feb 3;10(2):210-7. Erratum in: Cell Stem Cell. 2012 Apr 6;10(4):480. PMID: 22305570. PMCID: PMC3273989. PUBMED Abstract

Schulz KR, Danna EA, Krutzik PO, Nolan GP. (2012) Single-cell phospho-protein analysis by flow cytometry. Curr Protoc Immunol. 2012 Feb;Chapter 8:Unit 8.17.1-20. PMID: 22314834. PMC in Process. PUBMED Abstract

Newell EW, Sigal N, Bendall SC, Nolan GP, Davis MM. (2012) Cytometry by time-of-flight shows combinatorial cytokine expression and virus-specific cell niches within a continuum of CD8+ T cell phenotypes. Immunity. 2012 Jan 27;36(1):142-52. PMID: 22265676. PMC in Process. PUBMED Abstract

Zhang B, Ng D, Jones C, Oh ST, Nolan GP, Salehi S, Wong W, Zehnder JL, Gotlib J. (2011) A novel splice donor mutation in the thrombopoietin gene leads to exon 2 skipping in a Filipino family with hereditary thrombocythemia. Blood. 2011 Dec 22;118(26):6988-90. PMC in Process.

Nolan GP. (2011)Flow cytometry in the post fluorescence era. Best Pract Res Clin Haematol. 2011 Dec;24(4):505-8. PUBMED Abstract

Heffner GC, Clutter MR, Nolan GP, Weissman IL. (2011) Novel hematopoietic progenitor populations revealed by direct assessment of GATA1 protein expression and cMPL signaling events. Stem Cells. 2011 Nov;29(11):1774-82. PUBMED Abstract

Palazzo AL, Evensen E, Huang YW, Cesano A, Nolan GP, Fantl WJ. (2011) Association of reactive oxygen species-mediated signal transduction with in vitro apoptosis sensitivity in chronic lymphocytic leukemia B cells. PLoS One. 2011;6(10):e24592. Epub 2011 Oct 10. PUBMED Abstract

Qiu P, Simonds EF, Bendall SC, Gibbs KD Jr, Bruggner RV, Linderman MD, Sachs K, Nolan GP, Plevritis SK. (2011) Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE. Nat Biotechnol. 2011 Oct 2;29(10):886-91. PUBMED Abstract

Knijnenburg TA, Roda O, Wan Y, Nolan GP, Aitchison JD, Shmulevich I. (2011) A regression model approach to enable cell morphology correction in high-throughput flow cytometry. Mol Syst Biol. 2011 Sep 27;7:531. PUBMED Abstract

Thomas C, Moraga I, Levin D, Krutzik PO, Podoplelova Y, Trejo A, Lee C, Yarden G, Vleck SE, Glenn JS, Nolan GP, Piehler J, Schreiber G, Garcia KC. (2011) Structural linkage between ligand discrimination and receptor activation by type I interferons. Cell. 2011 Aug 19;146(4):621-32. PUBMED Abstract

Bendall SC, Simonds EF, Qiu P, Amir el-AD, Krutzik PO, Finck R, Bruggner RV, Melamed R, Trejo A, Ornatsky OI, Balderas RS, Plevritis SK, Sachs K, Pe'er D, Tanner SD, Nolan GP . (2011) Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum. Science. 2011 May 6;332(6030):687-96. PUBMED Abstract

Kenneth D. Gibbs, Jr., Penney M. Gilbert, Karen Sachs, Feifei Zhao, Helen M. Blau, Irving L. Weissman, Nolan GP, and Ravindra Majeti. (2011) Single-cell phospho-specific flow cytometric analysis demonstrates biochemical and functional heterogeneity in human hematopoietic stem and progenitor compartments. Blood. 2011 Apr 21;117(16):4226-33. Epub 2011 Feb 28. PUBMED Abstract

Schadt EE, Linderman MD, Sorenson J, Lee L, Nolan GP . (2011) Cloud and heterogeneous computing solutions exist today for the emerging big data problems in biology. Nat Rev Genet. 2011 Mar;12(3):224. Epub 2011 Feb 8. PUBMED Abstract

Krutzik PO, Trejo A, Schulz KR, Nolan GP. (2011)Phospho flow cytometry methods for the analysis of kinase signaling in cell lines and primary human blood samples. Methods Mol Biol. 2011;699:179-202. .PUBMED Abstract

Krutzik PO, Clutter MR, Trejo A, Nolan GP . (2011) Fluorescent cell barcoding for multiplex flow cytometry. Curr Protoc Cytom. 2011 Jan;Chapter 6:Unit 6.31.PUBMED Abstract

Chapters in Books

(B1) Cloning, sequencing and differential splicing of the Lyt-2 gene. Hiromatsu Nakauchi, Garry P. Nolan, Masatoshi Tagawa, and Leonard A. Herzenberg. New Horizons in Animal Models for Autoimmune Disease. Academic Press. 1987. pp 133-140.

(B2) In Situ detection of transcriptionally-active chromatin and genetic regulatory elements in individual viable mammalian cells. William G. Kerr, Garry P. Nolan, and Leonard A. Herzenberg. (1989) Immunology. Special Conference edition, Vol. 68, supplement 2, pp 74-79. PUBMED Abstract

(B3) Lymphoid VDJ recombinase activity: Development of a novel fluorescence-based assay system. George D. Yancopoulos, Garry P. Nolan, Roberta Pollock, Suzanne Li, Leonard A. Herzenberg, and Frederick W. Alt. (1989) Vectors as Tools for the Study of Normal and Abnormal Growth and Differentiation. Edited by H. Lother et al. Springer-Verlag, NATO Series, Vol H 34.

(B4) Use of E. coli lacZ (b-galactosidase) as a reporter gene. Grant R. MacGregor, Garry P. Nolan, Steven Feiring, Mario Roederer and Leonard A. Herzenberg. Gene Transfer and Expression Protocols. Volume 7. Edited by E.J. Murray. The Humana Press. (1990). p 217-230.

(B5) Transcriptionally-defective retroviruses containing lacZ for the in situ detection of endogenous genes and developmentally-regulated chromatin. William G. Kerr, Garry P. Nolan, Andrew Serafini, Leonard Herzenberg. (1990) Cold Spring Harbor Symposia in Quantitative Biology. Volume 54, pp 767-776.

(B6) In situ detection of stage-specific genes and enhancers in B cell differentiation via gene-search retrovirus. William G. Kerr, Garry P. Nolan, Jeffrey Johnson, and Leonard A. Herzenberg. (1990) Adv. in Exp. Biol. Med. Vol 292 pp 217-230. PUBMED Abstract

(B7) Applications of retrovirus-mediated expression cloning. Mayumi Onishi, Shigemi Kinoshita, Yoshihiro Morikawa, Akira Shibuya, Joe Phillips, Lewis L. Lanier, Daniel M. Gorman, Garry P. Nolan, Atsushi Miyajima, Toshio Kitamura. 1996) Experimental Hematology. Volulme 24 pp 324-329.

(B8) Pear, W., Scott, M., and Nolan, G.P. (1997) Generation of high titre, helper-free retroviruses by transient transfection. In Methods in Molecular Medicine: Gene Therapy Protocols, (P. Robbins, ed.), Humana Press, Totowa, NJ), pp. 41-57.

(B9) Smith, R. and Nolan, G.P. (2000) Retroviral and Lentiviral approaches for gene therapy for autoimmune disease. Current Directions in Autoimmunity, Vol. 2: Biologic and Gene Therapy of Autoimmunity, pp167-188, ed. C.G.Fathman, Stanford, Calif., S. Karger AG, Basel.

Edited Books

Nolan, G.P. and Scwartzman, T., Gene Therapy and Protein Expression Technologies. Current Opinion in Biotechnology. 1999.

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