Ontologies in support of formal representations of biological systems
Nigam Shah and Mark Musen
in The Handbook on Ontologies, (second edition)
Editors: Stephen Staab and Rudi Studer

Biomedical Data/Content Acquisition, Curation.
Nigam Shah
in the Encyclopedia of Database Systems, (Springer Verlag)
Area Editor: Vipul Kashyap

C. Jonquet, M. A. Musen, N. H. Shah
Help will be provided for this task: Ontology-Based Annotator Web Service
Stanford Center for Biomedical Informatics Research Technical Report,
BMIR 2008-1317, 2008
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N. H. Shah, C. Jonquet
Ontrez Project Report
Stanford Center for Biomedical Informatics Research Technical Report,
BMIR 2007-1289, November 2007
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Shah NH, and Mark A. Musen
Which Annotation did you mean?
Stanford Medical Informatics Technical Report, SMI-2007-1247, May 2007
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Shah NH, and Mark A. Musen
UMLS-Query: A Perl Module for Querying the UMLS
Stanford Medical Informatics Technical Report, SMI-2007-1242, March 2007
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Shah NH, Mark A. Musen and Nina V. Fedoroff
Clench2.0: Cluster enrichment analysis and visualization of expression, annotation and transcription factor binding site data
Stanford Medical Informatics Technical Report, SMI-2006-1248, Aug 2006
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