http://www.stanford.edu/~nigam/cgi-bin/dokuwiki/ 2008-10-11T12:24:28-07:00 http://www.stanford.edu/~nigam/cgi-bin/dokuwiki/ http://www.stanford.edu/~nigam/cgi-bin/dokuwiki/lib/images/favicon.ico text/html 2008-09-29T15:10:52-07:00 Nigam Shah http://www.stanford.edu/~nigam/cgi-bin/dokuwiki/doku.php?id=publications&rev=1222726252&do=diff1222726252 2008 Nigam H. Shah, Clement Jonquet, Annie P. Chiang, Atul J. Butte, Rong Chen and Mark A. Musen Ontology-driven Indexing of Public Datasets for Translational Bioinformatics BMC Bioinformatics special issue for the AMIA Summit on Translational Bioinformatics 2008 Kotecha N, Bruck K, Lu W and Shah N.H. Pathway Knowledge Base: An Integrated pathway resource using BioPAX Accepted in Applied Ontology, Feb 2008 text/html 2008-09-08T11:58:16-07:00 Nigam Shah http://www.stanford.edu/~nigam/cgi-bin/dokuwiki/doku.php?id=latest_in_research&rev=1220900296&do=diff1220900296 text/html 2008-09-08T11:57:54-07:00 Nigam Shah http://www.stanford.edu/~nigam/cgi-bin/dokuwiki/doku.php?id=home&rev=1220900274&do=diff1220900274 SMI pageLinkedIn PublicationsProjectsResearchcalendar[ CV] Academic Interests My research interest is to use bio-ontologies for organizing biomedical information to make it actionable. Specifically, I work on developing ontology based approaches to integrate diverse information types available for biological systems. Currently, we are drowning in information but thirsty for knowledge; ontologies might help fix that. I work on a number of projects around this theme. text/html 2008-08-01T15:01:26-07:00 Nigam Shah http://www.stanford.edu/~nigam/cgi-bin/dokuwiki/doku.php?id=hyque&rev=1217628086&do=diff1217628086 This page describes our ideas on HyQue (for Hypothesis-based Querying of pathway models), which will take as input working hypotheses about pathway models expressed in a knowledge-based formalism, evaluate their consistency using existing data in a knowledgebase, and provide as output contradictory evidence and suggestions for improving hypotheses. HyQue will incorporate formal knowledge representations based upon Semantic Web standards and an ontology to represent biological objects and rela… text/html 2008-05-09T10:47:09-07:00 Nigam Shah http://www.stanford.edu/~nigam/cgi-bin/dokuwiki/doku.php?id=calendar&rev=1210355229&do=diff1210355229