Nigam Shah
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FunTaxIS-lite: a simple and light solution to investigate protein functions in all living organisms
An approach for proteins and their encoding genes synonyms integration based on protein ontology
Augmented intelligence facilitates concept mapping across different electronic health records
GOWDL: gene ontology-driven wide and deep learning model for cell typing of scRNA-seq data
Clustering rare diseases within an ontology-enriched knowledge graph
Evaluation of OMOP CDM, i2b2 and ICGC ARGO for supporting data harmonization in a breast cancer use case of a multicentric European AI project
Mechanism of XiJiaQi in the treatment of chronic heart failure: Integrated analysis by pharmacoinformatics, molecular dynamics simulation, and SPR validation
A hybrid Stacking-SMOTE model for optimizing the prediction of autistic genes
HNetGO: protein function prediction via heterogeneous network transformer
EGeRepDR: An enhanced genetic-based representation learning for drug repurposing using multiple biomedical sources
Prediction of submitochondrial proteins localization based on Gene Ontology
BBLN: A bilateral-branch learning network for unknown protein-protein interaction prediction
Automated exploitation of deep learning for cancer patient stratification across multiple types
SSLpheno: a self-supervised learning approach for gene-phenotype association prediction using protein-protein interactions and gene ontology data
HeNeCOn: An ontology for integrative research in Head and Neck cancer
A knowledge graph-based data harmonization framework for secondary data reuse
Patient safety classifications, taxonomies and ontologies, part 2: A systematic review on content coverage
CellGO: a novel deep learning-based framework and webserver for cell-type-specific gene function interpretation
Term-BLAST-like alignment tool for concept recognition in noisy clinical texts
Neuronal Spike Shapes (NSS): A straightforward approach to investigate heterogeneity in neuronal excitability states
Obtaining clinical term embeddings from SNOMED CT ontology
The PACIFIC ontology for heterogeneous data management in cardiology
An integrative framework for clinical diagnosis and knowledge discovery from exome sequencing data
SpliceWiz: interactive analysis and visualization of alternative splicing in R
Development of a 3-Step theory of suicide ontology to facilitate 3ST factor extraction from clinical progress notes
Identify gestational diabetes mellitus by deep learning model from cell-free DNA at the early gestation stage
OHDSI Standardized Vocabularies-a large-scale centralized reference ontology for international data harmonization
RDmaster: A novel phenotype-oriented dialogue system supporting differential diagnosis of rare disease
Analyzing the molecular mechanism of xuefuzhuyu decoction in the treatment of pulmonary hypertension with network pharmacology and bioinformatics and verifying molecular docking
Insights into the inner workings of transformer models for protein function prediction
Weighted Combination of Łukasiewicz implication and Fuzzy Jaccard similarity in Hybrid Ensemble Framework (WCLFJHEF) for Gene Selection
Interpreting protein abundance in Saccharomyces cerevisiae through relational learning
Explaining protein-protein interactions with knowledge graph-based semantic similarity
A phrase-based questionnaire-answering approach for automatic initial frailty assessment based on clinical notes
Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning
A Knowledge-based Decision Support System for recommending safe recipes to individuals with dysphagia
Improving the interoperability of drugs terminologies: Infusing local standardization with an international perspective
BioLORD-2023: semantic textual representations fusing large language models and clinical knowledge graph insights
Lysosome-related biomarkers in preeclampsia and cancers: Machine learning and bioinformatics analysis
Partial order relation-based gene ontology embedding improves protein function prediction
Critical roles of S100A12, MMP9, and PRTN3 in sepsis diagnosis: Insights from multiple microarray data analyses
Integrating network pharmacology and in silico analysis deciphers Withaferin-A's anti-breast cancer potential via hedgehog pathway and target network interplay
Insights into dietary phytochemicals targeting Parkinson's disease key genes and pathways: A network pharmacology approach
What Powers Trastuzumab's Cardiotoxicity? Decoding Mitochondrial-Related Gene Expression Through Integrative Review and Meta-Analysis in Cardiomyocytes
MetaTron: advancing biomedical annotation empowering relation annotation and collaboration
m6A-TCPred: a web server to predict tissue-conserved human m<sup>6</sup>A sites using machine learning approach
PCAO2: an ontology for integration of prostate cancer associated genotypic, phenotypic and lifestyle data
Symptom-based drug prediction of lifestyle-related chronic diseases using unsupervised machine learning techniques
Predicting nutrition and environmental factors associated with female reproductive disorders using a knowledge graph and random forests
A protein-protein interaction network aligner study in the multi-objective domain
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