Molecular simulation of ab initio protein folding for a millisecond folder NTL9(1-39)
Vincent A. Voelz, Gregory R. Bowman, Kyle Beauchamp and Vijay S. Pande. Submitted
Unfolded state dynamics and structure of protein L characterized by simulation and experiment
Vincent A. Voelz, Vijay R. Singh, William J. Wedemeyer, Lisa J. Lapidus, Vijay S. Pande. Submitted.
Probing the nanosecond dynamics of a designed three-stranded beta-sheet with massively parallel molecular dynamics simulation.
Vincent A. Voelz, Edgar Luttmann, Gregory R. Bowman and Vijay S. Pande. International Journal of Molecular Sciences, 10(3), 1013-1030 (2009)
[DOI]
A Blind Test of Physics-Based Prediction of Protein Structures
M. Scott Shell, S. Banu Ozkan, Vincent Voelz, G. Albert Wu, and Ken A. Dill. Biophysical Journal, 96(3): 917-24 (2009)
[DOI]
Predicting peptide structures in native proteins from physical simulations.
Vincent Voelz, M. Scott Shell and Ken A. Dill. PLoS Computational Biology, 5(2):e1000281 (2009)
[DOI]
A multiscale approach to sampling nascent peptide chains in the ribosomal exit tunnel.
Vincent A. Voelz, Paula Petrone and Vijay S. Pande. Pacific Symposium on Biocomputing, 14:340-352 (2009).
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The protein folding problem: when will it be solved?
Dill KA, Ozkan SB, Weikl TR, Chodera JD, Voelz VA. Curr Opin Struct Biol, 17:342-346 (2007)
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Exploring Zipping and Assembly as a Protein Folding Principle.
Vincent A. Voelz and Ken A. Dill. Proteins: Structure, Function, and Bioinformatics, 66:877-888 (2007)
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Information Content of Molecular Structures.
David C. Sullivan, Tiba Aynechi, Vincent A. Voelz, and Irwin D. Kuntz.
Biophysical Journal 85(1): 174-190 (2003).
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Molecular dynamics simulation of site-directed spin labeling: experimental validation in muscle fibers.
Leslie EW Laconte*, Vincent Voelz*, Wendy Nelson, and David. D. Thomas.
Biophysical Journal. 83: 1854-1866 (2002). (*coauthors).
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A Cooperative Molecular Modeling Exercise--The Hypersurface as Classroom.
Cramer, Christopher J.; Kormos, Bethany L.;Winget, Paul; Audette, Vanessa M.; Beebe, Jeremy M.; Brauer, Carolyn S.; Burdick, W. Russ; Cochran, Eric W.; Eklov, Brian L.; Giese, Timothy J.; Jun, Yongseok; Kesavan, Lakshmi S. D.; Kinsinger, Christopher R.; Minyaev, Mickail E.; Rajamani, Ramkumar; Salsbury, Jonathon S.; Stubbs, John M.; Surek, Jack T.; Thompson, Jason D.; Voelz, Vincent A.;Wick, Collin D.; Zhang, Ling. J. Chem. Educ. (2001) 78 1202.
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