Other Topics

• The Data Analysis BriefBook - an encyclopedia of computational methods
• GSL - GNU Scientific Library

• PharmGKB
• MIS 214 Reader
• Bay Area Bioinformatics - discussion group
• Genomics Glossary
• S-Star.org collaborative bioinformatics teaching on the web
• Sequence Analysis Annotated Bibliography
• GROMACS - molecular dynamics simulation
• Bioinformatics On-line Courses and Tutorials
• NIH Human Brain Project - neuroinformatics

• Introduction to Finite Element Method - I & II
• Finite Element Method Articles

• Research Methods Knowledge Base - social research methodology
• Evidence Based Radiology
• Stanford Encyclopedia of Philosophy
• Logical Fallacies Index
• Lecture Notes on Free Will and Determinism - by Norman Schwartz

Research Centers
• Bio-X - Stanford University
• Institute for Systems Biology
• QB3 - Quantitative Biomedical Research at UCB, UCSC, UCSF
• Lewis-Sigler Institute for Integrative Genomics - Princeton University
• Janelia Farm - HHMI
• Duke Institute for Genome Sciences & Policy
• California NanoSystems Institute - UCLA
• New Life Sciences Initiative - Cornell
• Genome Institute of Singapore
• Molecular Sciences Institute - Berkeley
• Biopolis - Singapore
• BioPharmaceutical Glossary, Taxonomies
• -Omes and -omics glossary
• Omes Table

• GO - Gene Ontology
• OBO - Open Biological Ontologies
• NCI Thesaurus Browser
• SBML - Systems Biology Markup Language
• AnatML
• CellML

• IUPS Physiome Project
• E-Cell
• Gepasi - Biochemical Simulation
• Microcirculation Physiome Project
• BioPSE - University of Utah

• How do you store your journal articles?
• HubMed - alternative interface to PubMed
• HubLog thread: advances in online biomedical literature management
• DEVONthink - information manager for Mac OS X
• Organising Academic Papers
• CiteULike - share, store, and organise academic papers
• Knowledge Management Systems Blog
• Information Clients

• Cognitive Architecture - from Univ Michigan
• Tree of Life
• Healthopedia
• NCBI CoffeeBreak
• Interagency Opportunities in Multi-Scale Modeling in Biomedical, Biological, and Behavioral Systems
• The Particle Adventure - the fundamentals of matter and force
• MathWorld News: The Mathematics of Tsunamis
• BioTeach - a collection of articles and other resources on biotechnology
• On the Perception of Incongruity: A Paradigm - Jerome S. Bruner and Leo Postman (1949)
• Y.F. Leung's Functional Genomics
• Omics Space
• International HapMap Project
• NRCAM - National Resource for Cell Analysis and Modeling
• CMISS - Continuum Mechanics, Image analysis, Signal processing and System Identification
• Continuity 6 - UCSD
• SBW - Systems Biology Workbench
• Entelos
• Physiome Project
• Pharsight
• Simulations Plus Inc
• OBF - Open Bioinformatics Foundation
• BIOS - Biological Innovation for Open Society
• OmniGene - Open Source, Open Standards Bioinformatics
• Integr8 - genomic/proteomic browser
• I3C - Interoperable Informatics Infrastructure Consortium
• caBIO - cancer Bioinformatics Infrastructure Objects
• BioSPICE - open source framework and toolset for modeling dynamic cellular network functions
• BMI 214 - Representations and Algorithms for Computational Molecular Biology
• Open Dynamics Engine (ODE) - open source rigid body dynamics
• SAM - Significance Analysis of Microarrays
• PAM - Prediction Analysis of Microarrays
• KnowledgeWeb Project - James Burke
• BioTeach - broad range of info on biotechnology
• MeV - MultiExperiment Viewer for microarrays
• eMedicine - clinical knowledge base
• Labscape Project - Ubiquitous Computing in the Cell Biology Laboratory
• Idea Generation Methods
• BioConductor - open source software for bioinformatics
• Catalyzing Inquiry at the Interface of Computing and Biology - edited by John Wooley and Herbert Lin
• Simulation-Based Engineering Science report