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Journal Papers

[1] T. Rohlfing, N. M. Zahr, E. V. Sullivan, and A. Pfefferbaum, “The SRI24 multichannel atlas of normal adult human brain structure,” Human Brain Mapping, p. in press, 2010. [ bib | DOI | PDF | Abstract ]
[2] E. V. Sullivan, J. Rose, T. Rohlfing, and A. Pfefferbaum, “Postural sway reduction in aging men and women: Relation to brain structure, cognitive status, and stabilizing factors,” Neurobiology of Aging, vol. 30, no. 5, pp. 793-807, 2009. [ bib | DOI | PDF | Abstract ]
[3] N. M. Zahr, E. L. Fasano Crawford, O. Hsu, S. Vinco, D. Mayer, T. Rohlfing, A. Pfefferbaum, and E. V. Sullivan, “In vivo glutamate decline associated with kainic-acid induced status epilepticus,” Brain Research, 2009. [ bib | DOI | PDF | Publisher Link | Abstract ]
[4] A. Pfefferbaum, M. J. Rosenbloom, T. Rohlfing, C. A. Kemper, S. Deresinski, and E. V. Sullivan, “Frontostriatal fiber bundle compromise in HIV infection without dementia,” AIDS, vol. 23, no. 15, pp. 1977-1985, 2009. [ bib | DOI | PDF | Publisher Link | Abstract ]
[5] A. Pfefferbaum, E. Adalsteinsson, T. Rohlfing, and E. V. Sullivan, “MRI estimates of brain iron concentration in normal aging: Comparison of field-dependent (FDRI) and phase (SWI) methods,” NeuroImage, vol. 47, no. 2, pp. 493-500, 2009. [ bib | DOI | PDF | Abstract ]
[6] L. Lüdemann, D. Prochnow, T. Rohlfing, T. Franiel, C. Warmuth, M. Taupitz, H. Rehbein, and D. Beyersdorff, “Simultaneous quantification of perfusion and permeability in the prostate using dynamic contrast-enhanced magnetic resonance imaging with an inversion-prepared dual-contrast sequence,” Annals of Biomedical Engineering, vol. 37, no. 4, pp. 749-762, 2009. [ bib | DOI | PDF | Publisher Link | Abstract ]
[7] E. V. Sullivan, E. Adalsteinsson, T. Rohlfing, and A. Pfefferbaum, “Relevance of iron deposition in deep gray matter brain structures to cognitive and motor performance in healthy elderly men and women: Exploratory findings,” Brain Imaging and Behavior, vol. 3, no. 2, pp. 167-175, 2009. [ bib | DOI | PDF | Publisher Link | Abstract ]
[8] A. Pfefferbaum, M. Rosenbloom, T. Rohlfing, and E. V. Sullivan, “Degradation of selective lateral and interhemispheric brain white matter systems in alcoholism detected with quantitative fiber tracking,” Biological Psychiatry, vol. 65, no. 8, pp. 680-690, 2009. [ bib | DOI | PDF | Abstract ]
[9] N. M. Zahr, T. Rohlfing, A. Pfefferbaum, and E. V. Sullivan, “Problem solving, working memory, and motor correlates of association and commissural fiber bundles in normal aging: A quantitative fiber tracking study,” NeuroImage, vol. 44, no. 3, pp. 1050-1062, 2009. [ bib | DOI | PDF | Abstract ]
[10] A. Pfefferbaum, E. Adalsteinsson, T. Rohlfing, and E. V. Sullivan, “Diffusion tensor imaging of deep gray matter brain structures: Effects of age and iron concentration,” Neurobiology of Aging, p. in press, 2009. [ bib | DOI | PDF | Abstract ]
[11] S. Girod, T. Rohlfing, and C. R. Maurer, Jr., “Imaging and intraoperative guidance in implant-based auricular reconstruction,” Journal of Oral and Maxillofacial Surgery, vol. 66, no. 6, pp. 1302-1306, 2008. [ bib | DOI | PDF | Publisher Link ]
[12] A. E. Kurylas, T. Rohlfing, S. Krofczik, A. Jenett, and U. Homberg, “Standardized atlas of the brain of the desert locust, schistocerca gregaria,” Cell and Tissue Research, vol. 333, no. 1, pp. 125-145, 2008. [ bib | DOI | PDF | Publisher Link | Abstract ]
[13] A. Pfefferbaum, N. M. Zahr, D. Mayer, S. Vinco, J. Orduna, T. Rohlfing, and E. V. Sullivan, “Ventricular expansion in wild-type Wistar rats after alcohol exposure by vapor chamber,” Alcoholism: Clinical and Experimental Research, vol. 32, no. 8, pp. 1459-1467, 2008. [ bib | DOI | PDF | Publisher Link | Abstract ]
[14] G. S. Jefferis, C. J. Potter, A. M. Chan, E. C. Marin, T. Rohlfing, C. R. Maurer, Jr., and L. Luo, “Comprehensive maps of Drosophila higher olfactory centers: Spatially segregated fruit and pheromone representation,” Cell, vol. 128, no. 6, pp. 1187-1203, 2007. [ bib | PDF | Publisher Link | Abstract ]
[15] K. M. Pohl, S. Bouix, M. Nakamura, T. Rohlfing, R. W. McCarley, R. Kikinis, W. E. L. Grimson, M. E. Shenton, and W. M. Wells, “A hierarchical algorithm for MR brain image parcellation,” IEEE Transactions on Medical Imaging, vol. 26, no. 9, pp. 1201-1212, 2007. [ bib | DOI | PDF | Publisher Link | Abstract ]
[16] T. Rohlfing and C. R. Maurer, Jr., “Shape-based averaging,” IEEE Transactions on Image Processing, vol. 16, no. 1, pp. 153-161, 2007. [ bib | DOI | PDF | Publisher Link | Abstract ]
[17] M. J. Rosenbloom, T. Rohlfing, A. W. O'Reilly, S. A. Sassoon, A. Pfefferbaum, and E. V. Sullivan, “Improvement in memory and static balance with abstinence in alcoholic men and women: Selective relations with changes in regional ventricular volumes,” Psychiatry Research: Neuroimaging, vol. 155, no. 2, pp. 91-102, 2007. [ bib | DOI | PDF | Publisher Link | Abstract ]
[18] A. Pfefferbaum, M. J. Rosenbloom, T. Rohlfing, E. Adalsteinsson, C. A. Kemper, S. Deresinski, and E. V. Sullivan, “Contribution of alcoholism to brain dysmorphology in HIV infection: Effects on the ventricles and corpus callosum,” NeuroImage, vol. 33, no. 1, pp. 239-251, 2006. [ bib | DOI | PDF | Publisher Link | Abstract ]
[19] T. Rohlfing, E. V. Sullivan, and A. Pfefferbaum, “Deformation-based brain morphometry to track the course of alcoholism: Differences between intra-subject and inter-subject analysis,” Psychiatry Research: Neuroimaging, vol. 146, no. 2, pp. 157-170, 2006. [ bib | DOI | PDF | Publisher Link | Abstract ]
[20] H. Amthauer, T. Deneke, T. Rohlfing, J. Ruf, M. Böhmig, M. Gutberlet, U. Plöckinger, R. Felix, and A.-J. Lemke, “Value of image fusion using single photon emission computed tomography with integrated low dose computed tomography in comparison with a retrospective voxel-based method in neuroendocrine tumours,” European Radiology, vol. 15, no. 7, pp. 1456-1462, 2005. [ bib | DOI | PDF | Publisher Link | Abstract ]
[21] R. Brandt, T. Rohlfing, J. Rybak, S. Krofczik, A. Maye, M. Westerhoff, H.-C. Hege, and R. Menzel, “Three-dimensional average-shape atlas of the honeybee brain and its applications,” Journal of Comparative Neurology, vol. 492, no. 1, pp. 1-19, 2005. [ bib | DOI | PDF | Publisher Link | Abstract ]
[22] T. Rohlfing, J. Denzler, C. Gräßl, D. B. Russakoff, and C. R. Maurer, Jr., “Markerless real-time 3D target region tracking by motion backprojection from 2D projection images,” IEEE Transactions on Medical Imaging, vol. 24, no. 11, pp. 1455-1468, 2005. [ bib | DOI | PDF | Publisher Link | Abstract ]
[23] T. Rohlfing and C. R. Maurer, Jr., “Multi-classifier framework for atlas-based image segmentation,” Pattern Recognition Letters, vol. 26, no. 13, pp. 2070-2079, 2005. [ bib | DOI | PDF | Publisher Link | Abstract ]
[24] T. Rohlfing, D. B. Russakoff, J. Denzler, K. Mori, and C. R. Maurer, Jr., “Progressive attenuation fields: Fast 2D-3D registration without precomputation,” Medical Physics, vol. 32, no. 9, pp. 2870-2880, 2005. [ bib | DOI | PDF | Publisher Link | Abstract ]
[25] T. Rohlfing, F. Schaupp, D. Haddad, R. Brandt, A. Haase, R. Menzel, and C. R. Maurer, Jr., “Unwarping confocal microscopy images of bee brains by nonrigid registration to a magnetic resonance microscopy image,” Journal of Biomedical Optics, vol. 10, no. 2, pp. 024018, 2005. [ bib | DOI | PDF | Publisher Link | Abstract ]
[26] D. B. Russakoff, T. Rohlfing, J. R. Adler, Jr., and C. R. Maurer, Jr., “Intensity-based 2D-3D spine image registration incorporating a single fiducial marker,” Academic Radiology, vol. 12, no. 1, pp. 37-50, 2005. [ bib | DOI | PDF | Publisher Link | Abstract ]
[27] D. B. Russakoff, T. Rohlfing, K. Mori, D. Rueckert, J. R. Adler, Jr., and C. R. Maurer, Jr., “Fast generation of digitally reconstructed radiographs using attenuation fields with application to 2D-3D image registration,” IEEE Transactions on Medical Imaging, vol. 24, no. 11, pp. 1441-1454, 2005. [ bib | DOI | PDF | Publisher Link | Abstract ]
[28] H. Amthauer, J. Ruf, M. Böhmig, E. Lopez-Hänninen, T. Rohlfing, K.-D. Wernecke, U. Plöckinger, M. Gutberlet, A.-J. Lemke, T. Steinmüller, B. Wiedenmann, and R. Felix, “Diagnostics of neuroendocrine tumors by retrospective image fusion: Is there a benefit?,” European Journal of Nuclear Medicine, vol. 31, no. 3, pp. 342-348, 2004. [ bib | DOI | PDF | Publisher Link | Abstract ]
[29] M. J. Citardi, R. P. Gallivan, P. Batra, C. R. Maurer, Jr., T. Rohlfing, H.-J. Roh, and D. C. Lanza, “Quantitative computer-aided CT analysis of sphenoid sinus anatomical relationships,” American Journal of Rhinology, vol. 18, no. 3, pp. 173-178, 2004. [ bib | PDF | Publisher Link | Abstract ]
[30] A.-J. Lemke, S. M. Niehues, H. Amthauer, T. Rohlfing, N. Hosten, and R. Felix, “Klinischer Einsatz der digitalen retrospektiven Bildfusion von CT, MRT, FDG-PET und SPECT - Anwendungsgebiete und Ergebnisse [Clinical use of digital retrospective image fusion of CT, MRI, FDG-PET and SPECT - fields of indications and results],” Fortschr Röntgenstr, vol. 176, no. 12, pp. 1811-1818, 2004, article in German. [ bib | DOI | PDF | Publisher Link | Abstract ]
[31] A.-J. Lemke, S. M. Niehues, N. Hosten, H. Amthauer, M. Boehmig, C. Stroszczynski, T. Rohlfing, S. Rosewicz, and R. Felix, “Retrospective digital image fusion of multidetector CT and 18F-FDG PET: Clinical value in pancreatic lesions - a prospective study with 104 patients,” Journal of Nuclear Medicine, vol. 45, no. 8, pp. 1279-1286, 2004. [ bib | PDF | Publisher Link | Abstract ]
[32] T. Rohlfing, R. Brandt, R. Menzel, and C. R. Maurer, Jr., “Evaluation of atlas selection strategies for atlas-based image segmentation with application to confocal microscopy images of bee brains,” NeuroImage, vol. 21, no. 4, pp. 1428-1442, 2004. [ bib | DOI | PDF | Publisher Link | Abstract ]
[33] T. Rohlfing, C. R. Maurer, Jr., W. G. O'Dell, and J. Zhong, “Modeling liver motion and deformation during the respiratory cycle using intensity-based free-form registration of gated MR images,” Medical Physics, vol. 31, no. 3, pp. 427-432, 2004. [ bib | DOI | PDF | Publisher Link | Abstract ]
[34] T. Rohlfing, D. B. Russakoff, and C. R. Maurer, Jr., “Performance-based classifier combination in atlas-based image segmentation using expectation-maximization parameter estimation,” IEEE Transactions on Medical Imaging, vol. 23, no. 8, pp. 983-994, 2004. [ bib | DOI | PDF | Publisher Link | Abstract ]
[35] J. Ruf, E. Lopez Hänninen, T. Steinmüller, T. Rohlfing, H. Bertram, M. Gutberlet, A.-J. Lemke, R. Felix, and H. Amthauer, “Preoperative localization of parathyroid glands - use of MRI, scintigraphy, and image fusion,” Nuklearmedizin, vol. 43, no. 3, pp. 85-90, 2004. [ bib | PDF | Publisher Link | Abstract ]
[36] T. Rohlfing and C. R. Maurer, Jr., “Nonrigid image registration in shared-memory multiprocessor environments with application to brains, breasts, and bees,” IEEE Transactions on Information Technology in Biomedicine, vol. 7, no. 1, pp. 16-25, 2003. [ bib | PDF | Publisher Link | Abstract ]
[37] T. Rohlfing, C. R. Maurer, Jr., D. A. Bluemke, and M. A. Jacobs, “Volume-preserving nonrigid registration of MR breast images using free-form deformation with an incompressibility constraint,” IEEE Transactions on Medical Imaging, vol. 22, no. 6, pp. 730-741, 2003. [ bib | DOI | PDF | Publisher Link | Abstract ]
[38] T. Rohlfing, C. R. Maurer, Jr., D. Dean, and R. J. Maciunas, “Effect of changing patient position from supine to prone on the accuracy of a Brown-Roberts-Wells stereotactic head frame system,” Neurosurgery, vol. 52, no. 3, pp. 610-618, 2003. [ bib | PDF | Publisher Link | Abstract ]
[39] M. Holden, D. L. G. Hill, E. R. E. Denton, J. M. Jarosz, T. C. S. Cox, T. Rohlfing, J. Goodey, and D. J. Hawkes, “Voxel similarity measures for 3-D serial MR brain image registration,” IEEE Transactions on Medical Imaging, vol. 19, no. 2, pp. 94-102, 2000. [ bib | PDF | Publisher Link | Abstract ]
[40] N. Hosten, R. Kreissig, R. Puls, H. Amthauer, J. Beier, T. Rohlfing, C. Stroszczynski, A. Herbel, A.-J. Lemke, and R. Felix, “Fusion of CT and PET data: Methods and clinical relevance for planning laser-induced thermotherapy of liver metastases,” Fortschr Röntgenstr, vol. 172, no. 7, pp. 630-635, 2000. [ bib | PDF | Abstract ]
[41] T. Rohlfing, J. B. West, J. Beier, T. Liebig, C. A. Taschner, and U.-W. Thomale, “Registration of functional and anatomical MRI: Accuracy assessment and application in navigated neurosurgery,” Computer Aided Surgery, vol. 5, no. 6, pp. 414-425, 2000. [ bib | DOI | PDF | Publisher Link | Abstract ]

Peer-Reviewed Conference Papers

[1] T. Rohlfing, E. V. Sullivan, and A. Pfefferbaum, “Subject-matched templates for spatial normalization,” in Medical Image Computing and Computer-Assisted Intervention - MICCAI 2009. 12th International Conference, London, UK, September 20-24, 2009, Proceedings, Part II, Berlin/Heidelberg, 2009, vol. 5762 of Lecture Notes in Computer Science, pp. 224-231, Springer-Verlag. [ bib | DOI | PDF | Publisher Link | PubMed | Abstract ]
[2] T. Rohlfing, E. V. Sullivan, and A. Pfefferbaum, “Regression models of atlas appearance,” in Information Processing in Medical Imaging - 21st International Conference, IPMI 2009, Williamsburg, VA, July 5-10, 2009, Proceedings, J. L. Prince, D. L. Pham, and K. J. Myers, Eds., Berlin/Heidelberg, 2009, vol. 5636 of Lecture Notes in Computer Science, pp. 151-162, Springer-Verlag. [ bib | DOI | PDF | Publisher Link | Abstract ]
[3] S. Preibisch, R. Ejsmont, T. Rohlfing, and P. Tomancak, “Towards digital representation of drosophila embryogenesis,” in Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium. 2008, pp. 324-327, IEEE Press. [ bib | DOI | PDF | Publisher Link | Abstract ]
[4] T. Rohlfing, M. H. Rademacher, and A. Pfefferbaum, “Volume reconstruction using inverse interpolation: application to interleaved image motion correction,” in Medical Image Computing and Computer-Assisted Intervention - MICCAI 2008. 11th International Conference, New York, NY, USA, September 6-10, 2008, Proceedings, Part I, D. Metaxas, L. Axel, G. Fichtinger, and G. Székely, Eds., Berlin/Heidelberg, 2008, vol. 5241 of Lecture Notes in Computer Science, pp. 798-806, Springer-Verlag. [ bib | DOI | PDF | Publisher Link | Abstract ]
[5] T. Rohlfing, “Transformation model and constraints cause bias in statistics on deformation fields,” in Medical Image Computing and Computer-Assisted Intervention - MICCAI 2006: 9th International Conference, Copenhagen, Denmark, October 1-5, 2006, Proceedings, Part I, R. Larsen, M. Nielsen, and J. Sporring, Eds., Berlin/Heidelberg, 2006, vol. 4190 of Lecture Notes in Computer Science, pp. 207-214, Springer-Verlag. [ bib | DOI | PDF | Publisher Link | Abstract ]
[6] F. Mattern, T. Rohlfing, and J. Denzler, “Adaptive performance-based classifier combination for generic object recognition,” in Proceedings of 10th International Fall Workshop Vision, Modeling, and Visualization, November 16-18, 2005. Erlangen, Germany, G. Greiner, , J. Hornegger, H. Niemann, and M. Stamminger, Eds., Erlangen, Germany, 2005, pp. 139-146, Infix, Akademische Verlagsgesellschaft Berlin. [ bib | PDF | Abstract ]
[7] T. Rohlfing and C. R. Maurer, Jr., “Shape-based averaging for combination of multiple segmentations,” in Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005: 8th International Conference, Palm Springs, CA, USA, October 26-29, 2005, Proceedings, Part II, J. S. Duncan and G. Gerig, Eds., Berlin/Heidelberg, 2005, vol. 3750 of Lecture Notes in Computer Science, pp. 838-845, Springer-Verlag. [ bib | DOI | PDF | Publisher Link | Abstract ]
[8] T. Rohlfing, A. Pfefferbaum, E. V. Sullivan, and C. R. Maurer, Jr., “Information fusion in biomedical image analysis: Combination of data vs. combination of interpretations,” in Information Processing in Medical Imaging, G. E. Christensen and M. Sonka, Eds., Berlin, Germany, 2005, vol. 3565 of Lecture Notes in Computer Science, pp. 150-161, Springer-Verlag, 19th International Conference, IPMI 2005, Glenwood Springs, CO, USA, July 10-15, 2005. [ bib | DOI | PDF | Publisher Link | Abstract ]
[9] G. A. Heitz, T. Rohlfing, and C. R. Maurer, Jr., “Automatic generation of shape models using nonrigid registration with a single segmented template mesh,” in Proceedings of 9th International Fall Workshop Vision, Modeling, and Visualization, November 16-18, 2004. Stanford, CA, B. Girod, M. Magnor, and H.-P. Seidel, Eds., Berlin, Germany, 2004, pp. 73-80, Infix, Akademische Verlagsgesellschaft Berlin. [ bib | PDF | Abstract ]
[10] T. Rohlfing, J. Denzler, D. B. Russakoff, C. Gräßl, and C. R. Maurer, Jr., “Markerless real-time target region tracking: Application to frameless stereotactic radiosurgery,” in Proceedings of 9th Fall Workshop Vision, Modelling, and Visualization, November 16-18, 2004. Stanford, CA, B. Girod, M. Magnor, and H.-P. Seidel, Eds., Berlin, Germany, 2004, pp. 5-12, Infix, Akademische Verlagsgesellschaft Berlin. [ bib | PDF | Abstract ]
[11] T. Rohlfing and C. R. Maurer, Jr., “Multi-classifier framework for atlas-based image segmentation,” in Proceedings of IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Washington, DC, USA, June 27-July 2, 2004, Part I, Los Alamitos, CA, 2004, pp. 255-260, IEEE Press. [ bib | PDF | Publisher Link | Abstract ]
[12] T. Rohlfing, D. B. Russakoff, J. Denzler, and C. R. Maurer, Jr., “Progressive attenuation fields: Fast 2D-3D image registration without precomputation,” in Medical Image Computing and Computer-Assisted Intervention - MICCAI 2004. 7th International Conference, St. Malo, France, September 26-28, 2004, Proceedings, Part I, C. Barillot, D. P. Haynor, and P. Hellier, Eds., Berlin/Heidelberg, 2004, vol. 3216 of Lecture Notes in Computer Science, pp. 631-638, Springer-Verlag. [ bib | PDF | Publisher Link | Abstract ]
[13] D. B. Russakoff, C. Tomasi, T. Rohlfing, and C. R. Maurer, Jr., “Image similarity using mutual information of regions,” in Computer Vision - ECCV 2004: 8th European Conference on Computer Vision, Prague, Czech Republic, May 11-14, 2004. Proceedings, Part III, Berlin/Heidelberg, 2004, vol. 3023 of Lecture Notes in Computer Science, pp. 596-607, Springer-Verlag. [ bib | PDF | Publisher Link | Abstract ]
[14] T. Rohlfing, C. R. Maurer, D. A. Bluemke, and M. A. Jacobs, “An alternating-constraints algorithm for volume-preserving non-rigid registration of contrast-enhanced MR breast images,” in Biomedical Image Registration - Second International Workshop, WBIR 2003, Philadelphia, PA, USA, June 23-24, 2003, J. C. Gee, J. B. A. Maintz, and M. W. Vannier, Eds., Berlin/Heidelberg, 2003, vol. 2717 of Lecture Notes in Computer Science, pp. 291-300, Springer-Verlag. [ bib | PDF | Publisher Link | Abstract ]
[15] T. Rohlfing, D. B. Russakoff, and C. R. Maurer, Jr., “Expectation maximization strategies for multi-atlas multi-label segmentation,” in Information Processing in Medical Imaging, C. Taylor and J. A. Noble, Eds., Berlin/Heidelberg, 2003, vol. 2732 of Lecture Notes in Computer Science, pp. 210-221, Springer-Verlag, 18th International Conference, IPMI 2003, Ambleside, UK, July 2003. [ bib | PDF | Publisher Link | Abstract ]
[16] T. Rohlfing, D. B. Russakoff, and C. R. Maurer, Jr., “Extraction and application of expert priors to combine multiple segmentations of human brain tissue,” in Medical Image Computing and Computer-Assisted Intervention - MICCAI 2003. 6th International Conference, Montreál, Canada, November 15-18, 2003, Proceedings, Part II, R. E. Ellis and T. M. Peters, Eds., Berlin/Heidelberg, 2003, vol. 2879 of Lecture Notes in Computer Science, pp. 578-585, Springer-Verlag. [ bib | PDF | Publisher Link | Abstract ]
[17] D. B. Russakoff, T. Rohlfing, A. Ho, D. H. Kim, R. Shahidi, J. R. Adler, Jr., and C. R. Maurer, Jr., “Evaluation of intensity-based 2D-3D spine image registration using clinical gold-standard data,” in Biomedical Image Registration - Second International Workshop, WBIR 2003, Philadelphia, PA, USA, June 23-24, 2003, J. C. Gee, J. B. A. Maintz, and M. W. Vannier, Eds., Berlin/Heidelberg, 2003, vol. 2717 of Lecture Notes in Computer Science, pp. 151-160, Springer-Verlag. [ bib | PDF | Publisher Link | Abstract ]
[18] D. B. Russakoff, T. Rohlfing, and C. R. Maurer, Jr., “Fast intensity-based 2D-3D fluoroscopy-to-CT registration of clinical data using light fields,” in Ninth IEEE International Conference on Computer Vision, Proceedings, Los Alamitos, CA, 2003, IEEE Computer Society, pp. 416-422. [ bib | PDF | Publisher Link | Abstract ]
[19] D. B. Russakoff, T. Rohlfing, R. Shahidi, D. H. Kim, J. R. Adler, Jr., and C. R. Maurer, Jr., “Intensity-based 2D-3D spine image registration incorporating one fiducial marker,” in Medical Image Computing and Computer-Assisted Intervention - MICCAI 2003. 6th International Conference, Montreál, Canada, November 15-18, 2003, Proceedings, Part I, R. E. Ellis and T. M. Peters, Eds., Berlin/Heidelberg, 2003, vol. 2878 of Lecture Notes in Computer Science, pp. 287-294, Springer-Verlag. [ bib | PDF | Publisher Link | Abstract ]
[20] T. Rohlfing and C. R. Maurer, Jr., “A novel image similarity measure for registration of 3-D MR images and X-ray projection images,” in Proceedings of Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), Part II, T. Dohi and R. Kikinis, Eds., Berlin/Heidelberg, 2002, vol. 2488 of Lecture Notes in Computer Science, pp. 469-476, Springer-Verlag. [ bib | PDF | Publisher Link | Abstract ]
[21] T. Rohlfing, R. Brandt, C. R. Maurer, Jr., and R. Menzel, “Bee brains, B-splines and computational democracy: Generating an average shape atlas,” in IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, L. Staib, Ed., Kauai, HI, 2001, IEEE Computer Society, Los Alamitos, CA, pp. 187-194. [ bib | DOI | PDF | Publisher Link | Abstract ]
[22] T. Rohlfing and C. R. Maurer, Jr., “Intensity-based non-rigid registration using adaptive multilevel free-form deformation with an incompressibility constraint,” in Proceedings of Fourth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 2001), W. Niessen and M. A. Viergever, Eds., Berlin, 2001, vol. 2208 of Lecture Notes in Computer Science, pp. 111-119, Springer-Verlag. [ bib | PDF | Publisher Link | Abstract ]
[23] T. Rohlfing, J. Beier, J. B. West, U.-W. Thomale, T. Liebig, and C. A. Taschner, “Automated registration and fusion of functional and anatomical MRI for navigated neurosurgery,” in Medical Image Computing and Computer Assisted Intervention - MICCAI '99, C. Taylor and A. Colchester, Eds., Berlin, 1999, vol. 1679 of Lecture Notes in Computer Science, pp. 945-952, Springer-Verlag. [ bib | DOI | PDF | Abstract ]

Bookchapters

[1] T. Rohlfing, R. Brandt, R. Menzel, D. B. Russakoff, and C. R. Maurer, Jr., “Quo vadis, atlas-based segmentation?,” in The Handbook of Medical Image Analysis - Volume III: Registration Models, J. Suri, D. L. Wilson, and S. Laxminarayan, Eds., chapter 11, pp. 435-486. Kluwer Academic / Plenum Publishers, New York, NY, 2005. [ bib | PDF ]

Conference Papers

[1] S. Preibisch, S. Saalfeld, T. Rohlfing, and P. Tomancak, “Bead-based mosaicing of single plane illumination microscopy images using geometric local descriptor matching,” in SPIE Medical Imaging: Image Processing, J. P. W. Pluim and B. M. Dawant, Eds., Bellingham, WA, 2009, SPIE - The International Society for Optical Engineering, vol. 7259 of Proceedings of SPIE, p. 72592S, SPIE Press. [ bib | DOI | PDF | Publisher Link | Abstract ]
[2] S. Preibisch, T. Rohlfing, M. P. Hasak, and P. Tomancak, “Mosaicing of single plane illumination miscroscopy images using groupwise registration and fast content-based image fusion,” in Medical Imaging 2008: Image Processing, J. M. Reinhardt and J. P. W. Pluim, Eds., 2008, vol. 6914 of Proceedings of SPIE, p. 69140E. [ bib | DOI | PDF | Publisher Link | Abstract ]
[3] T. Rohlfing, N. M. Zahr, E. V. Sullivan, and A. Pfefferbaum, “The SRI24 multi-channel brain atlas: Construction and applications,” in Medical Imaging 2008: Image Processing, J. M. Reinhardt and J. P. W. Pluim, Eds., Bellingham, WA, 2008, vol. 6914 of Proceedings of SPIE, p. 691409. [ bib | DOI | PDF | Publisher Link | Abstract ]
[4] G. Heitz, T. Rohlfing, and C. R. Maurer, Jr., “Statistical shape model generation using nonrigid deformation of a template mesh,” in Medical Imaging 2005: Image Processing, J. M. Fitzpatrick and J. M. Reinhardt, Eds., Bellingham, WA, 2005, The International Society for Optical Engineering, vol. 5747 of Proceedings of SPIE, pp. 1411-1421, SPIE Press. [ bib | DOI | PDF | Publisher Link | Abstract ]
[5] T. Rohlfing, R. Brandt, R. Menzel, and C. R. Maurer, Jr., “Segmentation of three-dimensional images using non-rigid registration: Methods and validation with application to confocal microscopy images of bee brains,” in Medical Imaging: Image Processing, M. Sonka and J. M. Fitzpatrick, Eds., 2003, vol. 5032 of Proceedings of SPIE, pp. 363-374. [ bib | PDF | Publisher Link | Abstract ]
[6] T. Rohlfing, C. Maurer, Jr., D. A. Bluemke, and M. A. Jacobs, “Volumenerhaltende elastische Registrierung: Validierung mit klinischen MR-Mammographien,” in Bildverarbeitung für die Medizin 2003, T. Wittenberg, P. Hastreiter, U. Hoppe, H. Handels, A. Horsch, and H.-P. Meinzer, Eds., Berlin/Heidelberg, 2003, Informatik Aktuell, pp. 91-95, Springer-Verlag. [ bib | PDF | Publisher Link | Abstract ]
[7] T. Rohlfing, D. B. Russakoff, and C. Maurer, Jr., “An expectation maximization-like algorithm for multi-atlas multi-label segmentation,” in Bildverarbeitung für die Medizin 2003, T. Wittenberg, P. Hastreiter, U. Hoppe, H. Handels, A. Horsch, and H.-P. Meinzer, Eds., Berlin/Heidelberg, 2003, Informatik Aktuell, pp. 348-352, Springer-Verlag. [ bib | PDF | Publisher Link | Abstract ]
[8] T. Rohlfing, “Incremental method for computing the intersection of discretely sampled m-dimensional images with n-dimensional boundaries,” in Medical Imaging: Image Processing, M. Sonka and J. M. Fitzpatrick, Eds., 2003, vol. 5032 of Proceedings of SPIE, pp. 1346-1354. [ bib | DOI | PDF | Publisher Link | Abstract ]
[9] D. B. Russakoff, T. Rohlfing, D. Rueckert, and C. R. Maurer, Jr., “Fast calculation of digitally reconstructed radiographs using light fields,” in Medical Imaging: Image Processing, M. Sonka and J. M. Fitzpatrick, Eds., 2003, vol. 5032 of Proceedings of SPIE, pp. 684-695. [ bib | PDF | Publisher Link | Abstract ]
[10] T. Rohlfing, C. R. Maurer, Jr., D. Dean, and R. J. Maciunas, “The effect of changing patient position from supine to prone on the accuracy of a Cosman-Roberts-Wells (CRW) stereotactic head frame system,” in Medical Imaging: Visualization, Display, and Image-Guided Procedures, S. K. Mun, Ed., 2002, vol. 4681 of Proceedings of SPIE, pp. 516-526, An extended version of this paper was published as: T. Rohlfing, C. R. Maurer, Jr., D. Dean, and R. J. Maciunas, “Effect of changing patient position from supine to prone on the accuracy of a Brown-Roberts-Wells stereotactic head frame system,” Neurosurgery, vol. 52, pp. 610-618, Mar. 2003. [ bib | PDF | Publisher Link | Abstract ]
[11] T. Rohlfing, D. B. Russakoff, M. J. Murphy, and C. R. Maurer, Jr., “Intensity-based registration algorithm for probabilistic images and its application for 2-D to 3-D image registration,” in Medical Imaging: Image Processing, M. Sonka and J. M. Fitzpatrick, Eds., 2002, vol. 4684 of Proceedings of SPIE, pp. 581-591. [ bib | PDF | Publisher Link | Abstract ]
[12] D. B. Russakoff, T. Rohlfing, and C. R. Maurer, Jr., “Fuzzy segmentation of fluoroscopy images,” in Medical Imaging: Image Processing, M. Sonka and J. M. Fitzpatrick, Eds., 2002, vol. 4684 of Proceedings of SPIE, pp. 146-154. [ bib | PDF | Publisher Link | Abstract ]
[13] C. R. Maurer, Jr., F. Sauer, B. Hu, B. Bascle, B. Geiger, F. Wenzel, F. Recchi, T. Rohlfing, C. M. Brown, R. S. Bakos, R. J. Maciunas, and A. Bani-Hashemi, “Augmented reality visualization of brain structures with stereo and kinetic depth cues: System description and initial evaluation with head phantom,” in Medical Imaging: Visualization, Display, and Image-Guided Procedures, S. K. Mun, Ed., 2001, vol. 4319 of Proceedings of SPIE, pp. 445-456. [ bib | PDF | Publisher Link | Abstract ]
[14] T. Rohlfing, C. R. Maurer, Jr., W. G. O'Dell, and J. Zhong, “Modeling liver motion and deformation during the respiratory cycle using intensity-based free-form registration of gated MR images,” in Medical Imaging: Visualization, Display, and Image-Guided Procedures, S. K. Mun, Ed., 2001, vol. 4319 of Proceedings of SPIE, pp. 337-348. [ bib | PDF | Publisher Link | Abstract ]
[15] T. Rohlfing, “Efficient voxel lookup in non-uniformly spaced images using virtual uniform axes,” in Medical Imaging: Image Processing, M. Sonka and K. M. Hanson, Eds., 2001, vol. 4322 of Proceedings of SPIE, pp. 986-994. [ bib | DOI | PDF | Publisher Link | Abstract ]
[16] T. Rohlfing, D. Zerfowski, J. Beier, N. Hosten, P. Wust, and R. Felix, “Reduction of metal artifacts in computed tomographies for planning and simulation of radiation therapy,” in Computer Assisted Radiology and Surgery, H. U. Lemke, M. W. Vannier, K. Inamura, and A. G. Farman, Eds., Amsterdam, 1998, number 1165 in Excerpta Medica, International Congress Series, pp. 57-62, Elsevier. [ bib | PDF ]

Conference Abstracts

[1] T. Rohlfing, M. H. Rademacher, and A. Pfefferbaum, “Inverse interpolation algorithm for retrospective motion correction in interleaved images,” in ISMRM 16th Scientific Meeting & Exhibition. International Society for Magnetic Resonance in Medicine, 2008, p. 213, Poster #1462. [ bib | PDF ]
[2] G. S. Jefferis, C. J. Potter, A. M. Chan, E. C. Marin, T. Rohlfing, C. R. Maurer, Jr., and L. Luo, “Comprehensive maps of drosophila higher olfactory centers: Spatially segregated fruit and pheromone representation,” in Proceedings, Seventh Göttingen Meeting of the German Neuroscience Society, March 29 - April 1, 2007, Göttingen, Germany, K.-P. Hoffman and K. Krieglstein, Eds., 2007, pp. T20-8A. [ bib | PDF ]
[3] A. E. Kurylas, T. Rohlfing, A. Jenett, S. Krofczik, and U. Homberg, “Standardized atlas of the brain of the desert locust,” in Proceedings, Seventh Göttingen Meeting of the German Neuroscience Society, March 29 - April 1, 2007, Göttingen, Germany, K.-P. Hoffman and K. Krieglstein, Eds., 2007, pp. T20-8A. [ bib | PDF ]
[4] H. Bartsch, R. Brandt, and T. Rohlfing, “Analysis of the variability of honey bee brains after preparation for confocal imaging,” Abstract, Society for Neuroscience, Annual Meeting, 2005. [ bib | PDF | Abstract ]
[5] D. Haddad, T. Rohlfing, F. Schaupp, R. Menzel, and A. Haase, “Quantifying inter-subject differences between two in-situ bee brains using magnetic resonance microscopy and nonrigid registration,” in Proceedings, 8th International Conference on Magnetic Resonance Microscopy (ICMRM), Utsunomiya , Japan, August 22-26, 2005, 2005, Poster No. 65. [ bib | PDF ]
[6] C. A. Taschner, T. Liebig, N. Hosten, U. Thomale, T. Rohlfing, W. Lancksch, and R. Felix, “Presurgical functional MRI in patients with brain tumours,” NeuroImage, vol. 11, no. 5, pp. S167, 2000. [ bib | PDF ]

Theses

[1] T. Rohlfing, Multimodale Datenfusion für die bildgesteuerte Neurochirurgie und Strahlentherapie, Ph.D. thesis, Technische Universität Berlin, 2000. [ bib | PDF ]

URL: http://www.stanford.edu/~rohlfing/publications/index.html
Last updated October 19 2009 11:45:29.
Torsten Rohlfing, Ph.D., torsten@synapse.sri.com
SRI International, Neuroscience Program
333 Ravenswood Avenue, Menlo Park, CA 94025-3498, USA