Home Page
Click once!

DeCypher Results for: ClustalW Multiple Alignment

View dendrogram

humanTCF1        ------------------------------------------------------------
humanLef1        MPQLSGGGGG-----GG-------GDPELCATDEMIPFKDEGDPQKEKIFAEISHPEEEG
mouseTCF3        MPQLGGGRGGAGGGGGGSGAGATSGGDDLGANDELIPFQDEGGEEQEPSSDTAS---AQR
mouseTCF4        MPQLNGG-----------------GGDDLGANDELISFKDEG-EQEEKNSENSS---AER
DrosPangolin     MPHTHSRHGS--------------SGDDLCSTDEVKIFKDEGDREDEKISSENL------
elegansPOP1      ------------------------------------------------------------
                                                                              

humanTCF1        ------------------------------------------------------MYKETV
humanLef1        DLADIKSSLVNESE-IIPASNGHEVARQAQTSQEPYHDKAREHPDDGKHPDGGLYNKGPS
mouseTCF3        DLDEVKSSLVNESE-NQSSSSDSEAERRPQPARDAFQ-KPRDYFAEVRRPQDGAFFKGGA
mouseTCF4        DLADVKSSLVNESETNQDSSSDSEAERRPPPRSESFRDKSRESLEEAAKRQDGGLFKGPP
DrosPangolin     -LVEEKSSLIDLTE-------------------------SEEKGHKISRPDHSPVFNKLD
elegansPOP1      --MMADEELGDEVK---------------------------V-FRRDEDADDDPMISGET
                                                                         .

humanTCF1        YSAFNLLMHYPPPSG--AGQHPQPQPP---------------------------------
humanLef1        YSSYSGYIMMPNMNNDPYMSNGSLSPP-------IP------R-T---------------
mouseTCF3        YPGYP-FLMIPDLSS-PYLSNGPLSPGGARTYLQMKWPLLDVPSSA-----TVKDTRSPS
mouseTCF4        YPGYP-FIMIPDLTS-PYLPNGSLSPT-ARTYLQMKWPLLDVQAGSLQSRQTLKDARSPS
DrosPangolin     THAPS-FNMGYLVSPYSYANGSPSGLPV------------------T-------------
elegansPOP1      SEQQLADDKKEAVME-AELDGAGRNPS---------------------------------
                                                                              

humanTCF1        -------LHKANQPPHGVPQLSLYEHFNSPHPTPA------PADISQKQ-VHRPLQTPDL
humanLef1        ---S--NKVPVVQPSHAVHPLTPLITYSDEHFSPGSHPSHIPSDVNSKQGMSRHPPAPDI
mouseTCF3        PAHL-SNKVPVVQHPHHMHPLTPLITYSNDHFSPASPPTHLSPEIDPKTGIPRPPHPSEL
mouseTCF4        PAHIVSNKVPVVQHPHHVHPLTPLITYSNEHFTPGNPPPHLPADVDPKTGIPRPPHPPDI
DrosPangolin     ------MANKIGLPPFFCHNADPLSTPPPAHCGIP------PYQLDPKMGLTRPALYPFA
elegansPOP1      -------IDVLKSAFPKVEPMSPSFPGLMSHFSPG------YSAAALPMFMPLFMNPYAA
                                               *                   :

humanTCF1        SGFYSLTSGSMGQLPHTVSW----------------FTHPSL------------------
humanLef1        PTFYPLSPGGVGQITPPLGW----QGQPVYPIT-GGFRQPYPSSLSVDTSMS-----RF-
mouseTCF3        SPYYPLSPGAVGQIPHPLGWLVPQQGQPMYSLPPGGFRHPYP-ALAMNASMSSLVSSRF-
mouseTCF4        SPYYPLSPGTVGQIPHPLGWLVPQQGQPVYPITTGGFRHPYPTALTVNASMS-----RF-
DrosPangolin     GGQYPY-PMLSSDMSQVASW----HTPSVYSAS--SFRTPYPSSLPINTTLASDFPFRFS
elegansPOP1      ALRSPSLMFPMGAMSPTFPM-----------------FPPSPVYGAAIAAAAA-------
                     .      . :.                        *

humanTCF1        -MLGSGVPG--HPAAIPHPAIVPPSGKQELQPFDRNL--------------KTQAESKAE
humanLef1        SHHMIPGPPGPHTTGIPHPAIVTPQVKQEHPHTDSDLMH-----------VKPQHEQRKE
mouseTCF3        PHMVAPAHPGLPTSGIPHPAIVSPIVKQEPAAPSLSPAV-----------SAKSPVTVKK
mouseTCF4        PPHMVPPHHTLHTTGIPHPAIVTPTVKQESSQSDVGSLH-----------SSKHQDSKKE
DrosPangolin     PSLLPSVHATSHHVINAHSAIVGVSSKQECGVQDPTTNNRYPRNLEAKHTSNAQSNESKE
elegansPOP1      KQHFENMAPLNMRAGHPMNQMGMPPYMHPSSMAPQNV---------------DRRAQGGG
                                 .   :      :

humanTCF1        --KEAKKPTIKKPLNAFMLYMKEMRAKVIAE--CTLKESAAINQILGRRWHALSREEQAK
humanLef1        --QEPKRPHIKKPLNAFMLYMKEMRANVVAE--CTLKESAAINQILGRRWHALSREEQAK
mouseTCF3        --EEEKKPHVKKPLNAFMLYMKEMRAKVVAE--CTLKESAAINQILGRKWHNLSREEQAK
mouseTCF4        --EEKKKPHIKKPLNAFMLYMKEMRAKVVAE--CTLKESAAINQILGRRWHALSREEQAK
DrosPangolin     TTNDKKKPHIKKPLNAFMLYMKEMRAKVVAE--CTLKESAAINQILGRRWHELSREEQSK
elegansPOP1      --KAKKDDHVKKPLNAFVWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAK
                   :  *   :*******: :*** *  :: *   . *:** :*: **::** **:***:*

humanTCF1        YYELARKERQLHMQLYPGWSARDNYG---KKKRRSREKHQESTTETNWPR----------
humanLef1        YYELARKERQLHMQLYPGWSARDNYG---KKKKRKREKLQESASGTGPR-----------
mouseTCF3        YYELARKERQLHAQLYPTWSARDNYG---KKKKRKREKQLSQTQSQQQIQE---------
mouseTCF4        YYELARKERQLHMQLYPGWSARDNYG---KKKKRKRDKQPGETNEHSEC-----------
DrosPangolin     YYEKARQERQLHMELYPGWSARDNYGYVSKKKKRKKDRSTTDSGGNNMKKCRARFGLDQQ
elegansPOP1      YFEMAKKDKETHKERYPEWSARENYAVNKKKTKKRRDKSIPSENNDQKKCR---------
                 *:* *::::: * : ** ****:**.   **.:: :::   .

humanTCF1        -E------LKDGNGQESLSMSSSSSPA---------------------------------
humanLef1        --------MTAAYI----------------------------------------------
mouseTCF3        AEGALASKSKKPCIQYLPPEKPCDSPASSHGS-ALDSPATPSAALASPAAPAATHSEQAQ
mouseTCF4        --------FLNPCLS-LPPITDLSAPKKCRARFGLDQ-----------------QNNWCG
DrosPangolin     SQWCKPCRRKKKCIR-YMEALNGNGPAEDGSC--FDEHGSQLSDDDEDDYDDDKLGGSCG
elegansPOP1      -ARFGVNNTEMWCKFCKRKKKCEYATDRSGGS---DITDSQDGRGTSGAYSSSSESPSPK
                                                                              

humanTCF1        ------------------------------------------------------------
humanLef1        ------------------------------------------------------------
mouseTCF3        PLSLTTKPEARAQLALHSAAFLSAKAAASNSSQMGSQPPLLSRPLPLGSMPAALLTSPPT
mouseTCF4        PCSL--------------------------------------------------------
DrosPangolin     SADETNKIEDEDSESLNQSMPSPGCLSGLSSLQSPSTTMSLASPLNMNANSATNVIFPAS
elegansPOP1      ANAGIALTTQQQQAAMMHTMLMQMRLGSTTGASTHVPSPLASSSAGRSPLDANASDSESD
                                                                              

humanTCF1        ------------------------------------------------------------
humanLef1        ------------------------------------------------------------
mouseTCF3        FPATLHAHQALPVLQAQPLSLVTKSAH---------------------------------
mouseTCF4        ------------------------------------------------------------
DrosPangolin     SNALLIVGADQPTAQQRPTLVSTSGSSSGSTSSISTTPNTSSTVSPVTCMTGPCLGSSQE
elegansPOP1      VEEEEDEQIDPTVMQQTHDMLMQESMCTI-------------------------------
                                                                              

humanTCF1        ------------------------------------------------------------
humanLef1        ------------------------------------------------------------
mouseTCF3        ------------------------------------------------------------
mouseTCF4        ------------------------------------------------------------
DrosPangolin     RAMMLGNRFSHLGMGLSPPVVSTSTSKSEPFFKPHPTVCNNPIFALPSIGNCSLNISSMP
elegansPOP1      ------------------------------------------------------------
                                                                              

humanTCF1        ------------------------------------------------------------
humanLef1        ------------------------------------------------------------
mouseTCF3        ------------------------------------------------------------
mouseTCF4        ------------------------------------------------------------
DrosPangolin     NTSRNPIGANPRDINNPLSINQLTKRREYKNVELIEASESKTIVAHAATSIIQHVAVNGY
elegansPOP1      ------------------------------------------------------------
                                                                              

humanTCF1        ------------------------------------------------------------
humanLef1        ------------------------------------------------------------
mouseTCF3        ------------------------------------------------------------
mouseTCF4        ------------------------------------------------------------
DrosPangolin     HANHSLLNSNLGHLHHQLNNRTENPNRSEQTMLSVSNHSVNSSECHKESDSQAIVSSNPP
elegansPOP1      ------------------------------------------------------------
                                                                              

humanTCF1        -------------
humanLef1        -------------
mouseTCF3        -------------
mouseTCF4        -------------
DrosPangolin     NAGSSDNGVISVS
elegansPOP1      -------------
                               


Dendrogram (to view, enable Java on your browser)

Return to top

Dendrogram Source Data

( ( ( humanTCF1:0.24581, ( DrosPangolin:0.31171, elegansPOP1:0.43943) :0.07379) :0.07225, humanLef1:0.22065) :0.04916, mouseTCF3:0.19857, mouseTCF4:0.15655);

Job Details

Return to top
[BEGIN JOB STATUS]



[BEGIN CLUSTALW TIME] Thu Mar 01 09:46:01 2001
[END CLUSTALW TIME] Thu Mar 01 09:46:10 2001
[VERSION] 7.0.0.593
[SEARCH ID] CGI_1aaa5ws4dbaa6.tl6
[EOL] CRLF
[COMMENT] /Comment=ClustalW Multiple Alignment
[COMMENT] /CGI_Ver=7.0.0.104
[ALGORITHM] CW
[QUERY FORMAT] FASTA/PEARSON
[QUERY TYPE] AA
[QUERY SEARCH] 1
[QUERY PATH] d:\decypher\query
[QUERY SET] CGI_1aaa5ws4dbaa6.seq
[TARGET TYPE] AA
[RESULT PATH] d:\decypher\output
[OUTPUT FORMAT] TEXT PERCENTAGE EXTRACTALIGNED



[CLUSTALW RESULTS]


 CLUSTAL W (1.7) Multiple Sequence Alignments



Sequence type explicitly set to Protein
Sequence format is Pearson
Sequence 1: humanTCF1         269 aa
Sequence 2: humanLef1         399 aa
Sequence 3: mouseTCF3         584 aa
Sequence 4: mouseTCF4         459 aa
Sequence 5: DrosPangolin      751 aa
Sequence 6: elegansPOP1       438 aa
Start of Pairwise alignments
Aligning...
Sequences (1:2) Aligned. Score:  46
Sequences (1:3) Aligned. Score:  43
Sequences (1:4) Aligned. Score:  46
Sequences (1:5) Aligned. Score:  36
Sequences (1:6) Aligned. Score:  24
Sequences (2:3) Aligned. Score:  52
Sequences (2:4) Aligned. Score:  58
Sequences (2:5) Aligned. Score:  34
Sequences (2:6) Aligned. Score:  15
Sequences (3:4) Aligned. Score:  64
Sequences (3:5) Aligned. Score:  27
Sequences (3:6) Aligned. Score:  22
Sequences (4:5) Aligned. Score:  33
Sequences (4:6) Aligned. Score:  18
Sequences (5:6) Aligned. Score:  24
Guide tree        file created:   [d:\decypher\query\CGI_1aaa5ws4dbaa6.dnd]
Start of Multiple Alignment
There are 5 groups
Aligning...
Group 1: Sequences:   2      Score:6697
Group 2: Sequences:   3      Score:3200
Group 3: Sequences:   4      Score:1880
Group 4:                     Delayed
Group 5:                     Delayed
Sequence:5     Score:2412
Sequence:6     Score:2630
Alignment Score 9888
CLUSTAL-Alignment file created  [d:\decypher\output\cgi_1aaa5ws4dbaa6.out.aln]



[JOB MESSAGES]

Message=CGI_1aaa5ws4dbaa6.tl6 had no errors.



[END JOB STATUS]

Return to Request Page
For assistance contact
brutlag@stanford.edu