Publications

Journal Articles
1.	Fox, M.D., Reinbolt, J.A., Õunpuu, S., and Delp, S.L. "Mechanisms of improved knee flexion after rectus femoris transfer surgery." Journal of Biomechanics, (submitted).
2.	Koh, B.I., Reinbolt, J.A., George, A.D., Haftka, R.T., and Fregly, B.J. "Limitations of parallel global optimization for large-scale human movement problems." Medical Engineering & Physics, (submitted).
3.	Tawhai, M., Bischoff, J., Einstein, D., Erdemir, A., Guess, T., Reinbolt, J. "Multiscale Modeling in Computational Biomechanics: Determining Computational Priorities and Addressing Current Challenges." IEEE Engineering in Medicine and Biology, (accepted).
4.	Reinbolt, J.A., Fox, M.D., Arnold, A.S., Õunpuu, S., and Delp, S.L. "Importance of Preswing Rectus Femoris Activity in Stiff-Knee Gait." Journal of Biomechanics, 41(11):2362-2369, 2008..
5.	Fregly, B.J., Reinbolt, J.A., and Chmielewski, T.L. "Evaluation of a patient-specific cost function to predict the influence of foot path on the knee adduction torque during gait." Computer Methods in Biomechanics and Biomedical Engineering, 11(1):63-71, 2008.
6.	Reinbolt, J.A., Haftka, R.T., Chmielewski, T.L., and Fregly, B.J. "A computational framework to predict post-treatment outcome for gait-related disorders." Medical Engineering & Physics, 30(4):434-443, 2008.
7.	Fregly, B.J., Reinbolt, J.A., Rooney, K.L., Mitchell, K.H., and Chmielewski, T.L. "Design of patient-specific gait modifications for knee osteoarthritis rehabilitation." IEEE Transactions on Biomedical Engineering, 54(9):1687-1695, 2007.
8.	Reinbolt, J.A., Haftka, R.T., Chmielewski, T.L., and Fregly, B.J. "Are patient-specific joint and inertial parameters necessary for accurate inverse dynamics analyses of gait?" IEEE Transactions on Biomedical Engineering, 54(5):782-793, 2007.
9.	Schutte, J.F., Koh, B.I., Reinbolt, J.A., Fregly, B.J., Haftka, R.T., and George, A.D. "Evaluation of the particle swarm algorithm for biomechanical optimization." Journal of Biomechanical Engineering, 127(3):465-474, 2005.
10.	Reinbolt, J.A., Schutte, J.F., Fregly, B.J., Haftka, R.T., George, A.D., and Mitchell, K.H. "Determination of patient-specific multi-joint kinematic models through two-level optimization." Journal of Biomechanics, 38(3):621-626, 2005.
11.	Schutte, J.F., Reinbolt, J.A., Fregly, B.J., Haftka, R.T., and George, A.D. "Parallel global optimization with the particle swarm algorithm." International Journal of Numerical Methods in Engineering, 61(13):2296-2315, 2004.
12.	Koh, B.I., Reinbolt, J.A., Fregly, B.J., George, A.D., and Haftka, R.T. "Evaluation of parallel decomposition methods for biomechanical optimizations." Computer Methods in Biomechanics and Biomedical Engineering, 7(4):215-225, 2004.
13.	Tabaie, H.A., Graper, W.P., and Reinbolt, J.A. "Clinical investigation: endoscopic coronary artery bypass grafting with robotic assistance." The Heart Surgery Forum, 5(4):328-333, 2002.
14.	Connor, M.A., Handley, P.J., and Reinbolt, J.A. "Perioperative nurse training in cardiothoracic surgical robotics." Association of Operating Room Nurses Journal, 74(6):851-856, 2001.
15.	Tabaie, H.A., Reinbolt, J.A., Graper, W.P., Kelly, T.F., and Connor, M.A. "Endoscopic coronary artery bypass graft (E-CABG) procedure with robotic assistance." The Heart Surgery Forum, 2(4):310-317, 1999.

Conference Abstracts
1.	Reinbolt, J.A., Fox, M.D., Schwartz, M.H., and Delp, S.L. "Predicting outcomes of treatment for stiff-knee gait using supervised learning." In Proceedings of the 31st Annual Meeting of the American Society of Biomechanics, Stanford, CA, August 22-25, 2007.
2.	Fox, M.D., Reinbolt, J.A., Arnold, A.S., Ounpuu, S., and Delp, S.L. "Importance of preswing rectus femoris activity in stiff-knee gait." In Proceedings of the 31st Annual Meeting of the American Society of Biomechanics, Stanford, CA, August 22-25, 2007.
3.	Reinbolt, J.A., Fox, M.D., and Delp, S.L. "Investigating stiff-knee gait with subject-specific simulations." In Proceedings of the 7th Annual Biomedical Computation at Stanford Symposium (Best Oral Presentation Award), Stanford, CA, October 21, 2006.
4.	Fregly, B.J. and Reinbolt, J.A. "Simulation-based treatment planning for knee osteoarthritis." In Proceedings of the 30th Annual Meeting of the American Society of Biomechanics (Invited panelist presentation for special symposium on Modeling for Clinical Evaluation and Treatment), Blacksburg, VA, September 6-9, 2006.
5.	Reinbolt, J.A. and Fregly, B.J. "Benefits of automatic differentiation for biomechanical optimizations." In Proceedings of the 2006 Summer Bioengineering Conference, Amelia Island, FL, June 21-25, 2006.
6.	Fregly, B.J., Reinbolt, J.A., Rooney, K.L., Mitchell, K.H., and Chmielewski, T.L. "Predicting patient-specific gait modifications for knee osteoarthritis rehabilitation." In Proceedings of the 7th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering, Juan-les-Pins, Antibes, Côte d'Azur, France, March 22–25, 2006.
7.	Fregly, B.J., Reinbolt, J.A., Koh, B.I., and Chmielewski, T.L. "Evaluation of a patient-specific cost function to predict the influence of foot path on the knee adduction torque during gait." In Proceedings of the 7th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering, Juan-les-Pins, Antibes, Côte d'Azur, France, March 22–25, 2006.
8.	Fregly, B.J., Rooney, K.L., and Reinbolt, J.A. "Predicted gait modifications to reduce the peak knee adduction torque." In Proceedings of the XXth Congress of the International Society of Biomechanics and 29th Annual Meeting of the American Society of Biomechanics, Cleveland, OH, July 31-August 5, 2005.
9.	Reinbolt, J.A. and Fregly, B.J. "Creation of patient-specific dynamic models from three-dimensional movement data using optimization." In Proceedings of the Tenth International Symposium on Computer Simulation in Biomechanics, Cleveland, OH, July 28-30, 2005.
10.	Koh, B.I., Reinbolt, J.A., Fregly, B.J., and George, A.D. "Parallel decomposition methods for biomechanical optimization." In Proceedings of the Eighth International Symposium on the 3D Analysis of Human Movement, Tampa, FL, March 31-April 2, 2004.
11.	Fregly, B.J. and Reinbolt, J.A. "Estimation of body segment parameters from three-dimensional gait data using optimization." In Proceedings of the Eighth International Symposium on the 3D Analysis of Human Movement, Tampa, FL, March 31-April 2, 2004.
12.	Reinbolt, J.A., Schutte, J.F., Haftka, R.T., George, A.D., Mitchell, K.H., and Fregly, B.J. "Determination of patient-specific functional axes through two-level optimization." In Proceedings of the 2003 Summer Bioengineering Conference Key Biscayne, FL, June 25-29, 2003.
13.	Schutte, J.F., Koh, B.I., Reinbolt, J.A., Haftka, R.T., George, A.D., and Fregly, B.J. "Scale-independent biomechanical optimization." In Proceedings of the 2003 Summer Bioengineering Conference, Key Biscayne, FL, June 25-29, 2003.
14.	Tabaie, H.A., Graper, W.P., Reinbolt, J.A. "Clinical investigation: endoscopic coronary artery bypass grafting (E-CABG) with robotic assistance." In Proceedings of the International Society of Minimally Invasive Cardiac Surgery, Munich, Germany, June 27-30, 2001.

Academic Manuscripts
1.	Reinbolt, J.A. "Patient-specific dynamic modeling to predict functional outcomes." Doctor of Philosophy Dissertation, Department of Mechanical and Aerospace Engineering, University of Florida, Gainesville, FL, Spring 2006.
2.	Reinbolt, J.A. " Determination of patient-specific functional axes through two-level optimization." Master of Science Thesis, Department of Biomedical Engineering, University of Florida, Gainesville, FL, Summer 2003.
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