Paul Harnik : Research

Themes

Biotic and abiotic controls on evolutionary rates

Biotic and abiotic factors are widely believed to influence extinction risk and to have influenced the diversity dynamics of clades. I use the marine fossil record to test models relating such factors to evolutionary rates over a range of spatial and temporal scales.

In my postdoctoral research at Stanford University I have been primarily focusing on the relative influences of different forms of rarity on the macroevolution of marine animals in collaboration with Jonathan Payne (Stanford) and Carl Simpson (Humboldt University Berlin). Our work (Harnik et al. in prep.) has shown that extinction is consistently biased against narrowly-ranging genera. This pervasive effect did not produce a secular trend toward broader geographic range size, however, because of the antagonistic effects of origination.

I have also recently investigated extinction dynamics in marine bivalves in collaboration with Rowan Lockwood (College of William & Mary). In our review we presented new estimates of extinction and origination rates for marine bivalves through the Phanerozoic that account for temporal variation in the quality of the fossil record (Harnik & Lockwood in press). We then assessed the role of diversity-dependence in mediating these evolutionary rates and and reviewed the literature on biological predictors of extinction risk.

Marine ecosystems today are changing rapidly due to a variety of factors and relatively little is known about the ecological and evolutionary consequences these changes will have. With Seth Finnegan (CalTech) and Rowan Lockwood (William & Mary), I am co-leading an interdisciplinary working group at the National Evolutionary Synthesis Center focused on determinants of extinction in anicent and modern seas.

Macroecological drivers of extinction risk in the early Cenzoic

For my dissertation research at the University of Chicago I developed and tested a set of multivariate statistical models that relate the ecology of bivalve species to their persistence over the Paleogene (65-28 MYA) in the U.S. Gulf and Atlantic Coastal Plains. Contrary to the general assumptions of independence implicit in most models of extinction selectivity, these analyses show that broadly distributed species tend to be abundant and larger bodied. I have used structural equation modeling to examine simultaneously the direct and indirect contributions of these factors to species duration in three major lineages of marine bivalves (the Carditoidea, Pectinoidea, and Veneroidea). Species-level data for these analyses were gathered through quantitative field sampling and use of existing museum collections and literature records. These analyses indicate that geographic range is the primary explanatory variable in predicting species duration with abundance having little direct effect and body size having opposing direct effects among clades (Harnik 2011).

Abundance and extinction rates

To examine the influence of abundance on extinction rates globally over the post-Paleozoic, Carl Simpson and I analyzed data for marine bivalve genera using the Paleobiology Database. These analyses show that abundance was an important factor in bivalve extinction rates over the last 250 million years (Simpson and Harnik 2009). Yet, surprisingly our results reveal a persistent non-linear relationship between abundance and extinction rates which only in part corroborates general predictions. With increasing abundance extinction rate declines yet the most abundant taxa exhibit elevated rates.

Structure of diversity

The distribution of species among genera is markedly uneven, with most genera species-poor and few species-rich. This structure to taxonomic diversity may arise through differential rates of speciation and/or extinction. However, ecological factors such as competition and geographic range expansion/contraction also likely contribute. In collaboration with David Jablonski, Andrew Krug, and James Valentine, I have used a global database of extant bivalves to characterize the taxonomic structure of marine biomes and provinces and assess the contributions of taxon age and provincial area to these large-scale diversity distributions (Harnik et al. 2010).

In this research I have used ecological models, developed to describe the distribution of individuals among species, to reveal a general form to the distribution of species among genera in modern marine faunas, and null models to show that this spatial variation in taxonomic structure is not explained solely by variation in species richness. These diversity distributions in combination with age-of-first-occurrence data suggest that the taxonomic structure of regional faunas is shaped by differential speciation potentials among clades, as constrained by spatial variation in diversity accommodation space.

Rarity and sampling

One of the principal challenges in assessing extinction risk today and in the geologic past is that rarity is believed to influence extinction but is also known to affect sampling. Rare taxa are, by definition, encountered infrequently and their observed occurrences strongly controlled by sampling effort. To minimize this bias, I have developed new methods for sampling rare species through the integration of historical data from museum collections and the published literature and estimates of species abundance gathered from quantitative field samples (Harnik 2009).

Combining these two sources of data can provide a more comprehensive estimate of abundance and taxonomic diversity without substantial increase in current sampling effort, thereby expanding the scale of abundance and the sample size of species that can be included in paleoecological and evolutionary analyses. Applying these methods to data I have compiled from the literature for Paleogene mollusks underscores the magnitude of veiled diversity in marine fossil assemblages and the potential of existing sources of data to unveil rare taxa, allowing them to be incorporated into quantitative diversity studies.

Student-Scientist Partnerships

Engaging students in research is among the most effective and compelling ways to teach science. Student-Scientist Partnerships (SSP) using local paleontological materials solve the pedagogical problem of how to get students in touch with real science that is interesting to them, connects to their lives and prior knowledge, but requires little background or training to make a contribution to data acquisition and analysis. While at the Paleontological Research Institution, my colleagues and I developed the Devonian Seas Project, an SSP which engaged upper elementary through high school students and teachers in paleoecology research using the Devonian marine fossil record of New York State (Harnik and Ross 2003, 2004). Participants were involved in classroom-based research experiences and field-based professional development workshops. The goals of the project included specific educational and scientific results and also the creation of a model by which other institutions might institute similar partnerships in the geosciences.



Approaches

To explore these themes I use modern and ancient biological systems with a concentration on marine mollusks. Data are generated through a combination of field work, collections research, literature compilation, and use of existing databases. I program, model, and analyze data primarily using R, an open-source statistical platform.