Publications
Dudley JT, Schadt E, Sirota M, Butte AJ, Ashley E.
Drug Discovery in a Multidimensional World: Systems, Patterns, and
Networks. J Cardiovasc Transl Res. 2010.
Sirota M, Schaub MA, Batzoglou S, Robinson WH, Butte AJ. Autoimmune Disease Classification by Inverse Association with SNP Alleles. PLoS Genet 5(12): e1000792. doi:10.1371/journal.pgen.1000792. 2009.
Press Relese: http://med.stanford.edu/ism/2009/december/autoimmune-clusters.html
Schaub MA, Kaplow IM, Sirota M, Do CB, Butte AJ, Batzoglou S. A Classifier-based approach to identify genetic similarities between diseases. Bioinformatics 25: i21-29. 2009.
Gross SS, Do CB, Sirota M, Batzoglou S. Contrast: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction. Genome Biology 8, R269+, 2007.
Wadia P, Coram M, Sirota M, Miklos DB, Butte A. Global Assessment of B Cell Alloimmunity Using Human Protein Microarrays, Clinical ImmunologyVolume 123, Supplement 1, FOCIS 2007 Abstract Supplement - 7th Annual Meeting, S68, 2007.
Drosophila Comparative Genome Sequencing and Analysis Consortium. Evolution of genes and genomes in the context of the Drosophila phylogeny. Nature 450: 203-218, 2007.
Conference Presentations
Keynote Speaker: Advances in Autoimmune Informatics. Advances in
Bioinformatics and Genomics Symposium, February 19th, 2010. URL: http://meta-x.com/advancesbioinformatics/
Late Breaking Session: Autoimmune Disease Classification by Inverse Association with SNP Alleles. 2010 AMIA Summit on Translational Bioinformatics, March 11, 2010.
URL: http://summit2010.amia.org/summit-overview
Paper Presentation: Discovery and Validation of Novel Drug Indications Using Public Gene Expression Data. 2010 NLM Informatics Training Conference, June 15, 2010. Best Paper Award (First Day)
URL: http://www.tech-res.com/NLMInformatics2010/agenda.html
Selected Poster Presentation: Autoimmune Disease Classification by Inverse Association with SNP Alleles. RECOMB 2010, August 13, 2010.
URL: http://kdbio.inesc-id.pt/recomb2010/program.html