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What is LSC?LSC is a program written entirely in python2.6 that is able to correct the thrid generation long reads by the second generation short reads.
- Question: LSC 0.2.1 runs fine on a small set of data, but when it runs on the whole short read set (49 GB) I get an read error in awk:
(awk: read error (Bad address)At first try it reached 30 GB but this error popped up earlier and earlier with each run. This error also appears when I just run awk from the commandline on this set.
- Answer: The user may have used mawk that is a very fast AWK implementation by Mike Brennan based on a byte code interpreter. You will install GNU awk to run LSC.