software is open-source and freely distributed on my gitbhub page. We try
to document the code as thoroughly as possible but
sometimes we can fall behind.
Automated Fiber Quantification (AFQ)
High quality three dimensional visualization is essential for analyzing and understanding brain circuits. I have written a software package for building models of an individual's cortical surface and white matter tracts and interactively visualizing the functional and structural properties of these circuits in 3D. This code is included in the AFQ software package and can be downloaded from my github site.