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Genome Web news article about us!
There is a post in March 2009 on the GenomeWeb web site about the Open Biomedical Annotator.

NCBO Open Biomedical Services
I am currently working on semantic annotation with biomedical ontologies (learn more).

Résumé

Here is a short English version (3 pages) of my Résumé.

For courageous, here is a long version one (21 pages) French & English.


PhD defense
I have defended my PhD November 16, 2006 at LIRMM (more).

Welcome on my homepage!

Dr. Clement Jonquet, PhD in Informatics

Postdoctoral Scholar, Stanford Center for Biomedical Informatics Research (BMIR), Stanford University.

[How to contact me]

Short Bio

I am 28, I obtained my PhD in Informatics from University Montpellier 2, France in November 2006.

Since September 2007, I am a postdoc at the Stanford Center for Biomedical Informatics Research (BMIR) (the lab was previously called Stanford Medical Informatics) within Mark A. Musen's group. I am working in the National Center for Biomedical Ontology (NCBO) project. I am mainly working on semantic annotations of biomedical data using biomedical ontologies.

I obtained a BSc, a MSc, and a PhD in Informatics from University Montpellier 2, France. From 2003 to 2006, I had a French government PhD grant and I was supervised by Stefano A. Cerri. I worked on multi-agent systems, grid and service-oriented computing.

I was a member of the Laboratory of Informatics, Robotics, and Microelectronics of Montpellier (LIRMM), in the Kayou team, concerned with topics such as agents and multi-agent systems, constraints, learning, Web, Grid, service oriented architecture, ontologies, collaborative learning.

From 2003 to 2007, I also worked as a young lecturer and later, as a temporary assistant professor (French Attaché Temporaire d'Enseignement et de Recherche (ATER)) of computer science respectively at University Montpellier 2 and University of Montpellier 3.

I am interested in several domains such as Biomedical Informatics, Ontology and Semantic Web, Data integration and annotation, Multiagent systems, Service-Oriented Computing, Grid, Semantic Web, e-learning, distant collaboration, etc. [Research section]

New OBA prototype release - October 2008

I am developping the Open Biomedical Annotator (OBA), a web service that allows biomedical researchers to semantically annotate their data with biomedical ontologies from the NCBO BioPortal and UMLS.

A new release has just be deployed, you can check-it out here:
http://obs.bioontology.org/oba/OBA_v1.1_rest.html

More information on this web site: http://obs.bioontology.org

New BioPortal 2.0 release - August 2008

NCBO has just released the new version of BioPortal, the repository of biomedical ontologies developed by the center. A bunch of new features and new REST web services are available. Plus, BioPortal now includes the "Resources" tab that shows annotations that I have created within the Open Biomdeical Resources (OBR) index. The results available in the tab arew still "prototype" but it gives a nice idea.

                                                         Clement Jonquet's homepage - October 2008