@INPROCEEDINGS{Whe09-ISMB09,
    author       = "Patricia L. Whetzel, Natalya F. Noy, Nigam H. Shah, Benjamin Dai, Michael Dorf, Nicholas B. Griffith, Clement Jonquet, Daniel L. Rubin, Cherie H. Youn, Mark A. Musen",
    title        = "{BioPortal: Ontologies and Integrated Data Resources at the Click of a Mouse}",
    booktitle    = "Bio-Ontologies: Knowledge in Biology, SIG, Poster session, ISMBECCB'09",
    year         = "2009",
    address      = "Stockholm, Sweden",
    month        = "July",
}
@INPROCEEDINGS{Whe09-BioSIG09,
    author       = "Patricia L. Whetzel, Nigam H. Shah, Natalya F. Noy, Benjamin Dai, Michael Dorf, Nicholas B. Griffith, Clement Jonquet, Cherie H. Youn, Adrien Coulet, Chris Callendar, Daniel L. Rubin, Barry Smith, Margaret-Anne Storey, Christopher G. Chute, Mark A. Musen",
    title        = "{BioPortal: Ontologies and Integrated Data Resources at the Click of a Mouse}",
    booktitle    = "17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB'09) and the 8th European Conference on Computational Biology (ECCB'09), Poster session",
    year         = "2009",
    address      = "Stockholm, Sweden",
    month        = "July",
}
@INPROCEEDINGS{Jon09-BioSIG09,
    author       = "Clement Jonquet and Nigam H. Shah and Mark A. Musen",
    title        = "{Prototyping a Biomedical Ontology Recommender Service}",
    booktitle    = "Bio-Ontologies: Knowledge in Biology, SIG, ISMBECCB'09",
    year         = "2009",
    pages        = "65-68",
    address      = "Stockholm, Sweden",
    month        = "July",
}
@ARTICLE{Noy09-NAR09,
    author       = "Natalya F. Noy, Nigam H. Shah, Patricia L. Whetzel, Benjamin Dai, Michael Dorf, Nicholas B. Griffith, Clement Jonquet, Daniel L. Rubin, Margaret-Anne Storey, Christopher G. Chute and Mark A. Musen",
    title        = "{BioPortal: ontologies and integrated data resources at the click of a mouse}",
    journal      = "Nucleic Acids Research",
    year         = "2009",
    volume       = "",
    number       = "",
    pages        = "4",
    month        = "May",
    note         = "Advance Access published online",
}
@INPROCEEDINGS{Jon09-JFIM09,
    author       = "Clement Jonquet and Nigam H. Shah and Mark A. Musen",
    title        = "{Un service Web pour l'annotation sémantique de données biomédicales avec des ontologies}",
    booktitle    = "13èmes Journées Francophones d'Informatique Médicale, JFIM'09",
    year         = "2009",
    address      = "Nice, France",
    month        = "April",
}
@INPROCEEDINGS{Whe09-BioCurator09,
    author       = "Patricia L. Whetzel, Natasha F. Noy, Nigam H. Shah, Benjamin Dai, Michael Dorf, Nicholas B. Griffith, Clement Jonquet, Cherie H. Youn, Michael J. Montegut, Daniel L. Rubin, Margaret-Anne Storey, Chris G. Chute, Mark A. Musen",
    title        = "{BioPortal: A Web Repository for Biomedical Ontologies and Data Resources}",
    booktitle    = "3rd International Biocuration Conference, Poster presentations",
    pages        = "97",
    year         = "2009",
    address      = "Berlin, Germany",
    month        = "April",
}
@INPROCEEDINGS{Twi09-BioCurator09,
    author       = "Simon Twigger, Jennifer Smith, Rajni Nigam, Clement Jonquet, Mark A. Musen",
    title        = "{Billion Data Points Trapped in International Data Repository - Daring rescue Planned!}",
    booktitle    = "3rd International Biocuration Conference, Poster presentations",
    pages        = "34",
    year         = "2009",
    address      = "Berlin, Germany",
    month        = "April",
}
@INPROCEEDINGS{Jon09-STB09,
    author       = "Clement Jonquet and Nigam H. Shah and Mark A. Musen",
    title        = "{The Open Biomedical Annotator}",
    booktitle    = "AMIA Summit on Translational Bioinformatics",
    year         = "2009",
    pages        = "56-60",
    address      = "San Francisco, CA, USA",
    month        = "March",
}
@ARTICLE{Sha09-BMCBio09,
    author       = "Nigam H. Shah and Clement Jonquet and Annie P. Chiang and Atul J. Butte and Rong Chen and Mark A. Musen",
    title        = "{Ontology-driven Indexing of Public Datasets for Translational Bioinformatics}",
    journal      = "BMC Bioinformatics",
    year         = "2009",
    volume       = "10",
    month        = "February",
}
@INPROCEEDINGS{Whe09-PSB09,
    author       = "Patricia L. Whetzel, Natasha F. Noy, Nigam H. Shah, Benjamin Dai, Michael Dorf, Nicholas B. Griffith, Clement Jonquet, Michael J. Montegut, Daniel L. Rubin, Cherie H. Youn, Mark A. Musen",
    title        = "{BioPortal: A Web Repository for Biomedical Ontologies and Ontology-indexed Data Resources}",
    booktitle    = "Pacific Symposium on Biocomputing, Poster presentations",
    year         = "2009",
    pages        = "90",
    address      = "Hawaii, USA",
    month        = "January",
}
@INPROCEEDINGS{Dug08-AWeSOMe08,
    author       = "Pascal Dugénie and Clement Jonquet and Stefano A. Cerri",
    title        = "{The Principle of Immanence in GRID-Multiagent Integrated Systems}",
    booktitle    = "4th International Workshop On Agents and Web Services Merging in Distributed Environments, AWeSOMe'08, OTM 2008 Workshops",
    editor       = "R. Meersman and Z. Tari and P. Herrero",
    year         = "2008",
    editor       = "Springer-Verlag",
    volume       = "5333",
    publisher    = "Lecture Notes in Computer Science",
    pages        = "98-107",
    address      = "Monterrey, Mexico",
    month        = "November",
}
@INPROCEEDINGS{Mus08-AMIA08,
    author       = "Mark A. Musen and Nigam H. Shah and Natasha F. Noy and Benjamin Dai and Michael Dorf and Nicholas B. Griffith and James Buntrock and Clement Jonquet and Michael Montegut and Daniel L. Rubin",
    title        = "{BioPortal: Ontologies and Data Resources with the Click of a Mouse.}",
    booktitle    = "American Medical Informatics Association Annual Symposium, Demonstrations, AMIA'08",
    year         = "2008",
    pages        = "1223-1224",
    address      = "Washington DC, USA,",
    month        = "November",
}
@INPROCEEDINGS{Noy08-ISWC08,
    author       = "Natalya F. Noy and Nigam H. Shah and Benjamin Dai and Michael Dorf and Nicholas B. Griffith and Clement Jonquet and Michael Montegut and Daniel L. Rubin and Cherie Youn and Mark A. Musen",
    title        = "{BioPortal: A Web Repository for Biomedical Ontologies and Data Resources}",
    booktitle    = "Poster and Demonstration Session at the 7th International Semantic Web Conference, ISWC'08",
    year         = "2008",
    editor       = "C. Bizer and A. Joshi",
    volume       = "401",
    series       = "CEUR Workshop Proceedings",
    address      = "Karlsruhe, Germany",
    month        = "October",
    publisher    = "CEUR-WS.org",
}
@TECHREPORT{Jon08-OBAReport,
    author       = "Clement Jonquet and Mark A. Musen and Nigam H. Shah",
    title        = "{Help will be provided for this task: Ontology-Based Annotator Web Service}",
    institution  = "Stanford University",
    year         = "2008",
    type         = "Research report",
    number       = "BMIR-2008-1317",
    address      = "CA, USA",
    month        = "May",
}
@INPROCEEDINGS{Jon08-DILS08,
    author       = "Clement Jonquet and Mark A. Musen and Nigam H. Shah",
    title        = "{A System for Ontology-Based Annotation of Biomedical Data}",
    booktitle    = "International Workshop on Data Integration in the Life Sciences, DILS'08",
    year         = "2008",
    editor       = "A. Bairoch and S. Cohen-Boulakia and C. Froidevaux",
    volume       = "5109",
    series       = "Lecture Notes in BioInformatics",
    pages        = "144-152",
    address      = "Evry, France",
    month        = "June",
    publisher    = "Springer-Verlag",
}
@INPROCEEDINGS{Jon08-SOCASE08,
    author       = "Clement Jonquet and Pascal Dugenie and Stefano A. Cerri",
    title        = "{Service-Based Integration of Grid and Multi-Agent Systems Models}",
    booktitle    = "International Workshop on Service-Oriented Computing: Agents, Semantics, and Engineering, SOCASE'08",
    year         = "2008",
    editor       = "R. Kowalczyk and M.N. Huhns and M. Klusch and Z. Maamar and Q.B. Vo",
    volume       = "5006",
    series       = "Lecture Notes in Computer Science",
    pages        = "56-68",
    address      = "Estoril, Portugal",
    month        = "May",
    publisher    = "Springer-Verlag",
}
@ARTICLE{Jon08-MAGS08,
    author       = "Clement Jonquet and Pascal Dugenie and Stefano A. Cerri",
    title        = "{Agent-Grid Integration Language}",
    journal      = "Multiagent and Grid Systems",
    year         = "2008",
    volume       = "4",
    number       = "2",
    pages        = "167-211",
}
@TECHREPORT{Jon07-OntrezReport,
    author       = "Nigam H. Shah and Clement Jonquet and Mark A. Musen",
    title        = "{Ontrez project report}",
    institution  = "Stanford University",
    year         = "2007",
    type         = "Research report",
    number       = "SMI-2007-1289",
    address      = "USA",
    month        = "November",
}
@PHDTHESIS{Jon06-PhD,
    author       = "Clement Jonquet",
    title        = "{Dynamic Service Generation: Agent interactions for service exchange on the Grid}",
    school       = "University Montpellier 2",
    year         = "2006",
    address      = "Montpellier, France",
    month        = "November",
}
@INPROCEEDINGS{Duv06-AWeSOMe06,
    author       = "Frédéric Duvert and Clement Jonquet and Pascal Dugénie and Stefano A. Cerri",
    title        = "{Agent-Grid Integration Ontology}",
    booktitle    = "2nd International Workshop on Agents, Web Services and Ontologies Merging, AWeSOMe'06",
    editor       = "R. Meersman and Z. Tari and P. Herrero",
    year         = "2006",
    editor       = "Springer-Verlag",
    volume       = "4277",
    number       = "1",
    publisher    = "Lecture Notes in Computer Science",
    pages        = "136-146",
    address      = "Montpellier, France",
    month        = "November",
}
@INPROCEEDINGS{Jon06-JFSMA,
    author       = "Clement Jonquet and Pascal Dugénie and Stefano A. Cerri",
    title        = "{Intégration orientée service des modèles Grid et Multi-Agents}",
    booktitle    = "14èmes Journées Francophones sur les Systèmes Multi-Agents, JFSMA'06",
    year         = "2006",
    editor       = "V. Chevrier and M-P. Huget",
    pages        = "271-274",
    address      = "Annecy, France",
    month        = "October",
    publisher    = "Hermès",
}
@ARTICLE{Dug06-ATL06,
    author       = "Pascal Dugénie and Philippe Lemoisson and Clement Jonquet and Monica Crubézy",
    title        = "{The Grid Shared Desktop: a bootstrapping environment for collaboration}",
    journal      = "Advanced Technology for Learning, Special issue on Collaborative Learning",
    year         = "2006",
    volume       = "3",
    number       = "4",
    pages        = "241-249",
}
@INCOLLECTION{Dug06-eChallenges,
    author       = "Stefano A. Cerri and Monica Crubézy and Pascal Dugénie and Clement Jonquet and Phillippe Lemoisson",
    title        = "{The Grid Shared Desktop for CSCL}",
    booktitle    = "{Exploiting the Knowledge Economy: Issues, Applications, Case Studies}",
    publisher    = "IOS Press",
    year         = "2006",
    editor       = "P. Cunningham and M. Cunningham",
    volume       = "3",
    series       = "Information and Communication Technologies and the Knowledge Economy",
    pages        = "1493-1499",
    address      = "Amsterdam, Netherlands",
    note         = "Proceedings of eChallenges 2006 Conference, October 2006, Barcelona, Spain",
}
@TECHREPORT{Jon06-AGILspecRR,
    author       = "Clement Jonquet and Pascal Dugenie and Stefano A. Cerri",
    title        = "{AGIL specifications}",
    institution  = "University Montpellier 2",
    year         = "2006",
    type         = "Research report",
    number       = "06030",
    address      = "France",
    month        = "May",
}
@TECHREPORT{Dug06-ATL06,
    author       = "Pascal Dugénie and Philippe Lemoisson and Clement Jonquet and Monica Crubézy",
    title        = "{The Grid Shared Desktop: a bootstrapping environment for collaboration}",
    institution  = "University Montpellier 2",
    year         = "2006",
    type         = "Research report",
    number       = "06013",
    address      = "France",
    month        = "February",
}
@TECHREPORT{Jon06-GRID-MAS-RRfr,
    author       = "Clement Jonquet and Pascal Dugenie and Stefano A. Cerri",
    title        = "{Intégration orientée service des modèles Grid et multi-agents}",
    institution  = "University Montpellier 2",
    year         = "2006",
    type         = "Research report",
    number       = "06036",
    address      = "France",
    month        = "June",
}
@TECHREPORT{Jon06-GRID-MAS-RR,
    author       = "Clement Jonquet and Pascal Dugenie and Stefano A. Cerri",
    title        = "{Service-based integration of Grid and multi-agent systems models}",
    institution  = "University Montpellier 2",
    year         = "2006",
    type         = "Research report",
    number       = "06012",
    address      = "France",
    month        = "February",
}
@TECHREPORT{Jon06-CharacDSG,
    author       = "Clement Jonquet and Stefano A. Cerri",
    title        = "{Characterization of the Dynamic Service Generation concept}",
    institution  = "University Montpellier 2",
    year         = "2006",
    type         = "Research report",
    number       = "06007",
    address      = "France",
    month        = "February",
}
@ARTICLE{Jon05-STROBE,
    author       = "Clement Jonquet and Stefano A. Cerri",
    title        = "{The STROBE model: Dynamic Service Generation on the Grid}",
    journal      = "Applied Artificial Intelligence, Special issue on Learning Grid Services",
    year         = "2005",
    volume       = "19",
    number       = "9-10",
    pages        = "967-1013",
    month        = "October-November",
}
@INCOLLECTION{Jon05-LeGEWG-Book,
    author       = "Clement Jonquet and Marc Eisenstadt and Stefano A. Cerri",
    title        = "{Learning agents and Enhanced Presence for generation of services on the Grid}",
    booktitle    = "Towards the Learning GRID: advances in Human Learning Services",
    publisher    = "IOS Press",
    year         = "2005",
    editor       = "P. Ritrovato and C. Allison and S.A. Cerri and T. Dimitrakos and M. Gaeta and S. Salerno",
    volume       = "127",
    series       = "Frontiers in Artificial Intelligence and Applications",
    pages        = "203-213",
    month        = "November",
}
@INPROCEEDINGS{Jon05-idialogue,
    author       = "Clement Jonquet and Stefano A. Cerri",
    title        = "{i-dialogue: modeling agent conversation by streams and lazy evaluation}",
    booktitle    = "International Lisp Conference, ILC'05",
    year         = "2005",
    pages        = "219-228",
    address      = "Stanford University, CA, USA",
    month        = "June",
}
@TECHREPORT{Jon05-idialogueRR,
    author       = "Clement Jonquet and Stefano A. Cerri",
    title        = "{i-dialogue: modeling agent conversation by streams and lazy evaluation}",
    institution  = "University Montpellier 2",
    year         = "2005",
    type         = "Research report",
    number       = "05006",
    address      = "France",
    month        = "January",
}
@UNPUBLISHED{Jon05-SGS,
    author       = "Clement Jonquet",
    title        = "{A framework and ontology for Semantic Grid services: an integrated view of WSMF and WSRF}",
    note         = "Unpublished draft research report, University Montpellier 2, France and KMi, Open University, UK",
    month        = "May",
    year         = "2005",
}
@INPROCEEDINGS{Jon04-GLS04,
   author        = "Clement Jonquet and Stefano A. Cerri",
   title         = "{Agents Communicating for Dynamic Service Generation}",
   booktitle     = "1st International Workshop on Grid Learning Services, GLS'04",
   address       = "Maceio, Brazil",
   month         = "September",
   year          = "2004",
   url           = "www.lirmm.fr/~jonquet",
   pages         = "39-53",
}
@INPROCEEDINGS{Jon04-RFIA,
   author        = "Clement Jonquet and Stefano A. Cerri",
   title         = "{Agents as Scheme Interpreters: Enabling Dynamic Specification by Communicating}",
   booktitle     = "14th Congrès Francophone AFRIF-AFIA de Reconnaissance des Formes et Intelligence Artificielle, RFIA'04",
   address       = "Toulouse",
   month         = "January",
   volume        = "2",
   pages         = "779-788",
   year          = "2004",
}
@INPROCEEDINGS{Jon03-LeGE-WG,
   author        = "Stefano A. Cerri and Marc Eisenstadt and Clement Jonquet",
   title         = "{Dynamic Learning Agents and Enhanced Presence on the Grid}",
   booktitle     = "3rd International LeGE-WG Workshop: Grid Infrastructure to Support Future Technology Enhanced Learning",
   address       = "Berlin, Germany",
   month         = "December",
   year          = "2003",
   publisher     = "Electronic Workshops in Computing",
}
@INPROCEEDINGS{Jon03-JFSMA,
    author       = "Clement Jonquet and Stefano A. Cerri",
    title        = "{Apprentissage issu de la communication pour des agents cognitifs}",
    booktitle    = "11èmes Journées Francophones sur les Systèmes Multi-Agents, JFSMA'03",
    year         = "2003",
    editor       = "J-P. Briot and K. Ghédira",
    pages        = "83-87",
    address      = "Hammamet, Tunisia",
    month        = "November",
    publisher    = "Hermès",
}
@INPROCEEDINGS{Jon03-ALCAA,
   author        = "Clement Jonquet and Stefano A. Cerri",
   title         = "{Cognitive Agents Learning by Communicating}",
   booktitle     = "Colloque Agents Logiciels, Coopération, Apprentissage et Activité Humaine, ALCAA'03",
   address       = "Bayonne",
   month         = "September",
   year          = "2003",
   pages         = "29-39",
}
@MASTERSTHESIS{Jon03-DEA,
    author       = "Clement Jonquet",
    title        = "{Communication agent et interprétation Scheme pour l'apprentissage au méta-niveau}",
    school       = "University Montpellier 2",
    year         = "2003",
    address      = "Montpellier, France",
    month        = "June",
}