• Jones, J.H. (2011) Primates and the Evolution of Long-Slow Life Histories, in press, Current Biology. doi:10.1016/j.cub.2011.08.025.
• Rudicell, R., Jones, J.H., E. Wroblewski, G.H. Learn, Y. Li, J.D. Robertson, E. Greengrass, F. Grossman, S. Kamenya, L. Pineta, D.C. Mjungu, E. Lonsdorf, A. Mosser, C. Lehman, D.A. Collins, B.F. Keele, J. Goodall, B.H. Hahn, A.E. Pusey, M.L. Wilson. (2010) Impact of Simian Immunodeficiency Virus Infection on Chimpanzee Population Dynamics, PLoS Pathogens. 6(9): e1001116. (doi: 10.1371/journal.ppat.1001116
• Salkeld, D.J. M. Salathé, P. Stapp, J.H. Jones. Plague Outbreaks in Prairie Dog Populations Explained by Percolation Thresholds of Alternate Host Abundance, Proceedings of the National Academy of Sciences, USA, 107(32): 14247-14250. (doi:10.1073/pnas.1002826107).
• Kazandjieva, M.A., J. W. Lee, M. Salathé, M. W. Feldman, J. H. Jones, and P. Levis. (2010) Measuring a Human Contact Network for Epidemiology Research. ACM Proceedings of the 6th Workshop on Hot Topics in Embedded Networked Sensors, forthcoming.
• Jones, J.H., M.L. Wilson, C. Murray, and A.E. Pusey. (2010) Phenotypic quality influences fertility in Gombe chimpanzees, Journal of Animal Ecology, 79(6): 1262-1269. (doi:10.1111/j.1365-2656.2010.01687.x)
• Salathé, M. and J.H. Jones. (2010) Dynamics and Control of Diseases in Networks with Community Structure, PLoS Computational Biology. 6(4): e1000736. (doi:10.1371/journal.pcbi.1000736)
• Jones, J.H. (2010) Demography. In: Human Evolutionary Biology, In Muehlenbein, M, ed. Cambridge: Cambridge University Press. pp. 74-91.
• Hacker, J.D., L.R. Hilde and J.H. Jones. (2010) The Impact of the American Civil War on Southern Marriage Patterns, Journal of Southern History, LXXVI(February): 1-32.
• Jones, J.H. and M. Salathé. (2009) Early Assessment of Anxiety and Behavioral Response to Influenza A(H1N1), PLoS ONE 4(12): e8032. (doi:10.1371/journal.pone.0008032).
http://dx.doi.org/10.1371/journal.ppat.1001116
• Jones, J.H. (2009) Anthropology as Biosocial Science: The Future of Cross-Cutting Research. Anthropology News, December 2009: 5.
• Keele*, B.F., J. H. Jones*, K. A. Terio*, J. D. Estes*, R. S. Rudicell*, M. L. Wilson*, Y. Li, G. H. Learn, T. M. Beasley, J. Schumacher-Stankey, E. Wroblewski, A. Mosser, J. Raphael, S. Kamenya, E. V. Lonsdorf, J. G. Else, G. Silvestri, J. Goodall, P. M. Sharp, G. M. Shaw, A. E. Pusey and B. H. Hahn. (2009) Increased Mortality and AIDS-like Immunopathology in Wild Chimpanzees Infected with SIVcpz, Nature, 460: 515-519. (doi:10.1038/nature08200). *=authors contributed equally.
• Jones, J.H. (2009) The force of selection on the human life cycle, Evolution and Human Behavior, 30(5): 305-314. (doi:10.1016/j.evolhumbehav.2009.01.005).
• Jones, J.H. and B.D. Ferguson. (2009) Demographic and social predictors of intimate partner violence in Colombia: A dyadic power perspective, Human Nature, 20(2): 184-203. (doi:10.1007/s12110-009-9064-6)
• Bliege Bird, R., D.W. Bird, B.F. Codding, C.H. Parker and J.H. Jones. (2008) Anthropogenic fire mosaics, biodiversity and Australian Aboriginal foraging strategies: A test of the “Fire Stick Farming” hypothesis, Proceedings of the National Academy of Sciences, USA, 105(39): 14796-14801. (doi: 10.1073/pnas.0804757105)
• Jones, J.H. and R. Bliege Bird (2008) In defense of functionalism. Anthropology News, 49(7): 45-46.
• Jones, J.H. (2008) Culture for epidemic models and epidemic models for culture. In M. Brown, ed., Explaining Culture Scientifically, Seattle: University of Washington Press. pp. 117-136.
• Emery Thompson, M., J.H. Jones, A.E. Pusey, S. Brewer-Marsden, J. Goodall, D. Marsden, T. Matsuzawa, T. Nishida, V. Reynolds, Y. Sugiyama, and R.W. Wrangham. (2007) Aging and fertility in wild chimpanzees: implications for evolution of menopause. Current Biology, 17(24): 1-7. (doi:10.1016/j.cub.2007.11.033)
• Jones, J.H. (2007) demogR: A package for the construction and analysis of age-structured demographic models in R. Journal of Statistical Software, 22(10): 1-28.
• Jones, J.H. and B.D. Ferguson (2006) Excess male death leads to a severe marriage squeeze in Colombia, 1973-2005. Social Biology, 53(3-4): 140-151.
• Handcock, M.S. and J.H. Jones. (2006) Interval estimates for epidemic thresholds in two-sex network models, Theoretical Population Biology. 70(2): 125-134.
• Jones, J.H. (2006) The relative concentration of net maternity in chimpanzees and humans. American Journal of Human Biology, 18(2): 260
• J.H. Jones (2005) Fetal programming: Adaptive life-history tactic or making the best of a bad start? American Journal of Human Biology, 17(1): 22-33.
• Jones, J.H. (2005) Environmental variability, life-history tactics, and Neanderthal extinction. American Journal of Physical Anthropology, Suppl. 40: 123.
• Handcock, M.S. and J.H. Jones. (2004) Likelihood-based inference for stochastic models of sexual network evolution. Theoretical Population Biology, 65: 413-422.
• Jones, J.H. and M.S. Handcock. (2003a) Sexual contacts and epidemic thresholds. Nature, 423: 605-606.
• Jones, J.H. and M.S. Handcock. (2003b) An assessment of preferential attachment as a mechanism for the growth of human sexual networks. Proceedings of the Royal Society of London, B. 270: 1123-1128.
• Jones, J.H. (2003c) Review of Primate Life Histories and Socioecology, by P.M. Kappeler and M.E. Pereira, eds. Ecology, 85(2): 587-589.
• Nishida, T. R.W. Wrangham, J.H. Jones, A.J. Marshall, J. Wakibara. (2001) Do chimpanzees Survive the 21st Century? In The Apes: The Challenges for the 21st Century. Chicago: Chicago Zoological Society. pp. 43-51.
• Marshall, A.J., J.H. Jones, and R.W. Wrangham. (2000) The plight of the apes: The status of global ape populations. Brief prepared for H.R. 2340: The Great Ape Conservation Act.
• Wrangham, R.W., J.H. Jones, G. Laden, D. Pilbeam, and N. Conklin-Brittain. (1999) The raw and the stolen: Cooking and the ecology of human origins. Current Anthropology. 40(5): 567-594.
• Jones, J.H. (1998) Sex-biased mortality and the evolution of lemur social systems. American Journal of Physical Anthropology, Suppl. 26: 180.
• Jones, J.H. (1997) Ethology. In T. Barfield, ed., The Dictionary of Anthropology. Oxford: Blackwell Publications. pp. 167-168.
• Bercovitch, F.B., M.D. Hauser, and J.H. Jones. (1995) The endocrine stress response and alarm vocalizations in rhesus macaques. Animal Behaviour. 49: 1703-1706.
• Wrangham, R. W., J. H. Jones, and M. Leighton. (1995) The allometry of energy allocation: Commentary. Current Anthropology. 36(2): 216.
• Hauser, M. D. and J. H. Jones. (1995) Review of Aping Language, by Joel Wallman. American Journal of Physical Anthropology. 91: 531-533.

Submitted Papers

• Ferguson, B.D., J. Restrepo, and J.H. Jones. (2009) Missing men: The mortality costs of gun violence in Colombia 1985-2005, Demographic Research.
• Ryan, S.J., A.P. Dobson, and J.H. Jones. (2009) The effects of contact structure, demography and movement on disease transmission within a primate metapopulation, Revise and resubmit.
• Jones, J.H. and S. Tuljapurkar (2007) Risk management and the evolution of biparental care. Revise and resubmit.

Selected Working Papers

• Jones, J.H. S. Helleringer, and H.-P. Kohler. Discovering Structure: The Determinants of Sexual Network Patterns. In Pathways of Infection: Sexual Networks and HIV/AIDS in a sub-Saharan Population, in prep.
• Rudicell, R., J.H. Jones, E. Wroblewski, B. Keele, L Pineta, E. Greengrass, F. Grossman, S. Kamenya, A. Mosser, B. Hahn, A.E. Pusey, M.L. Wilson. Did SIVcpz contribute to the rapid decline of the Kalande chimpanzee community in Gombe National Park, Tanzania? Working Paper.
• Salkeld, D.J., P. Stapp, J.H. Jones. The climate-disease amplification hypothesis: Relationships between vector-abundance, host density, and weather in grasshopper mice. Working Paper.
• Jones, J.H. and D. Salkeld Wild bird culls are inefficient for control of avian influenza, Working Paper.
• Jones, J.H. and S. Jackman. Bayesian inference for finite mixture models: Heterogeneous composition of Californian birth cohorts 1970-2005. Working Paper (PAA 2008).
• Jones, J.H. S. Helleringer, H.-P. Kohler The epidemiological consequences of sexual network structure on Likoma Island, Malawi. Working Paper (PAA 2007).