#NEXUS

[!
----Character Importance Ranking Data File----

CIR Data for Graham et al. (1991)
	Graham LE, Delwiche CF, Mishler BD. 1991. Phylogenetic connections
	between the 'green algae' and the 'bryophytes'. Advances in
	Bryology 4:213-244.

Method and Template by:
	David DeGusta (degusta@stanford.edu)
	Department of Anthropological Sciences
	Building 360, Stanford University
	Stanford, CA 94305-2117
]


BEGIN PAUP;
	SET
		WARNRESET = NO
		NOTIFYBEEP = NO;
	LOG
		FILE = 'CLADISTICS:DD METHODS:LOG'
		REPLACE = YES;
	SET
		MONITOR = NO;
END;


BEGIN TAXA;

	DIMENSIONS NTAX=9;
	TAXLABELS
		Embryophytes             
		Coleochaete_orbicularis     
		Coleochaete_pulvinata     
		Chaetosphaeridium          
		Charales                   
		Zygnematales                
		Klebsormidiales             
		Chlorokybales              
		Prasinophyceae;
	
END;


BEGIN CHARACTERS;

DIMENSIONS NCHAR=21;
FORMAT MISSING=? GAP=- SYMBOLS= " 0 1 2";
		
	MATRIX	
Embryophytes                112101111111111101111
Coleochaete_orbicularis     112111111111111110000
Coleochaete_pulvinata       112011101011111110000
Chaetosphaeridium           ???01110101000?110000
Charales                    11?001101011011100000
Zygnematales                10100?000000001000000
Klebsormidiales             00?001000000000110000
Chlorokybales               ?00000000000000110000
Prasinophyceae              000000000000000110000
;

END;



BEGIN ASSUMPTIONS;

	WTSET '1.8' = 0.8: 1;
	WTSET '1.6' = 0.6: 1;
	WTSET '1.4' = 0.4: 1;
	WTSET '1.2' = 0.2: 1;
	WTSET '1.0' = 	0: 1;
	
	WTSET '2.8' = 0.8: 2;
	WTSET '2.6' = 0.6: 2;
	WTSET '2.4' = 0.4: 2;
	WTSET '2.2' = 0.2: 2;
	WTSET '2.0' = 	0: 2;
	
	WTSET '3.8' = 0.8: 3;
	WTSET '3.6' = 0.6: 3;
	WTSET '3.4' = 0.4: 3;
	WTSET '3.2' = 0.2: 3;
	WTSET '3.0' = 	0: 3;
	
	WTSET '4.8' = 0.8: 4;
	WTSET '4.6' = 0.6: 4;
	WTSET '4.4' = 0.4: 4;
	WTSET '4.2' = 0.2: 4;
	WTSET '4.0' = 	0: 4;
	
	WTSET '5.8' = 0.8: 5;
	WTSET '5.6' = 0.6: 5;
	WTSET '5.4' = 0.4: 5;
	WTSET '5.2' = 0.2: 5;
	WTSET '5.0' = 	0: 5;
	
	WTSET '6.8' = 0.8: 6;
	WTSET '6.6' = 0.6: 6;
	WTSET '6.4' = 0.4: 6;
	WTSET '6.2' = 0.2: 6;
	WTSET '6.0' = 	0: 6;
	
	WTSET '7.8' = 0.8: 7;
	WTSET '7.6' = 0.6: 7;
	WTSET '7.4' = 0.4: 7;
	WTSET '7.2' = 0.2: 7;
	WTSET '7.0' = 	0: 7;
	
	WTSET '8.8' = 0.8: 8;
	WTSET '8.6' = 0.6: 8;
	WTSET '8.4' = 0.4: 8;
	WTSET '8.2' = 0.2: 8;
	WTSET '8.0' = 	0: 8;
	
	WTSET '9.8' = 0.8: 9;
	WTSET '9.6' = 0.6: 9;
	WTSET '9.4' = 0.4: 9;
	WTSET '9.2' = 0.2: 9;
	WTSET '9.0' = 	0: 9;
	
	WTSET '10.8' = 0.8: 10;
	WTSET '10.6' = 0.6: 10;
	WTSET '10.4' = 0.4: 10;
	WTSET '10.2' = 0.2: 10;
	WTSET '10.0' = 	 0: 10;
	
	WTSET '11.8' = 0.8: 11;
	WTSET '11.6' = 0.6: 11;
	WTSET '11.4' = 0.4: 11;
	WTSET '11.2' = 0.2: 11;
	WTSET '11.0' = 	 0: 11;
	
	WTSET '12.8' = 0.8: 12;
	WTSET '12.6' = 0.6: 12;
	WTSET '12.4' = 0.4: 12;
	WTSET '12.2' = 0.2: 12;
	WTSET '12.0' = 	 0: 12;
	
	WTSET '13.8' = 0.8: 13;
	WTSET '13.6' = 0.6: 13;
	WTSET '13.4' = 0.4: 13;
	WTSET '13.2' = 0.2: 13;
	WTSET '13.0' = 	 0: 13;
	
	WTSET '14.8' = 0.8: 14;
	WTSET '14.6' = 0.6: 14;
	WTSET '14.4' = 0.4: 14;
	WTSET '14.2' = 0.2: 14;
	WTSET '14.0' = 	 0: 14;
	
	WTSET '15.8' = 0.8: 15;
	WTSET '15.6' = 0.6: 15;
	WTSET '15.4' = 0.4: 15;
	WTSET '15.2' = 0.2: 15;
	WTSET '15.0' = 	 0: 15;
	
	WTSET '16.8' = 0.8: 16;
	WTSET '16.6' = 0.6: 16;
	WTSET '16.4' = 0.4: 16;
	WTSET '16.2' = 0.2: 16;
	WTSET '16.0' = 	0:  16;
	
	WTSET '17.8' = 0.8: 17;
	WTSET '17.6' = 0.6: 17;
	WTSET '17.4' = 0.4: 17;
	WTSET '17.2' = 0.2: 17;
	WTSET '17.0' = 	0:  17;
	
	WTSET '18.8' = 0.8: 18;
	WTSET '18.6' = 0.6: 18;
	WTSET '18.4' = 0.4: 18;
	WTSET '18.2' = 0.2: 18;
	WTSET '18.0' = 	0:  18;
	
	WTSET '19.8' = 0.8: 19;
	WTSET '19.6' = 0.6: 19;
	WTSET '19.4' = 0.4: 19;
	WTSET '19.2' = 0.2: 19;
	WTSET '19.0' = 	0:  19;
	
	WTSET '20.8' = 0.8: 20;
	WTSET '20.6' = 0.6: 20;
	WTSET '20.4' = 0.4: 20;
	WTSET '20.2' = 0.2: 20;
	WTSET '20.0' = 	0:  20;
	
	WTSET '21.8' = 0.8: 21;
	WTSET '21.6' = 0.6: 21;
	WTSET '21.4' = 0.4: 21;
	WTSET '21.2' = 0.2: 21;
	WTSET '21.0' = 	0:  21;
	
END;

BEGIN PAUP;
	CLEARTREES
		NOWARN = YES;
	SET
		NOTIFYBEEP = NO;
END;


BEGIN TREES;

	TRANSLATE
		1 Embryophytes,
		2 Coleochaete_orbicularis,
		3 Coleochaete_pulvinata,
		4 Chaetosphaeridium,
		5 Charales,
		6 Zygnematales,
		7 Klebsormidiales,
		8 Chlorokybales,
		9 Prasinophyceae
		;
	TREE * UNTITLED = [&U] (1,(2,(3,((4,(6,(7,(8,9)))),5))));
	
END;

BEGIN PAUP;

	SAVETREES
		FILE = 'CLADISTICS:DD METHODS:TREES'
		ROOT = NO
		REPLACE = YES;
		
END;