#NEXUS [! ----Character Importance Ranking Data File---- Implemented in PAUP* 4.0b4a for Macintosh Method and Template by: David DeGusta (degusta@stanford.edu) Department of Anthropological Sciences Building 360, Stanford University Stanford, CA 94305-2117 USA Citation: DeGusta D (2004) A method for estimating the relative importance of characters in cladistic analyses. Systematic Biology 53:529-532. For More Information: See DeGusta (2004), the instructions posted on the Phylogenetic Methods section of www.stanford.edu/~degusta, or e-mail me at degusta@stanford.edu. ] [Comments with the **+** icon indicate sections where the user must customize this template. Note that this template must be used with the file CIR 3.1, which contains the routines for generating the distances. After customizing both this file and the CIR 3.1 file, you should execute the CIR 3.1 file, NOT this file.] BEGIN PAUP; SET WARNRESET = NO NOTIFYBEEP = NO; LOG [**+** Change the following filepath to reflect your hard drive name and the folder you want the log file stored in.] FILE = 'CLADISTICS:DD METHODS:LOG' REPLACE = YES; SET MONITOR = NO; [If you want to watch the progress of these methods in the display window, delete the preceding "Log" and "Set-Monitor" options, but leave the first Set options (warnreset and notifybeep) intact.] END; BEGIN TAXA; [**+** Replace this taxa information with your taxa information.] DIMENSIONS NTAX=10; TAXLABELS TAXON1 TAXON2 TAXON3 TAXON4 TAXON5 TAXON6 TAXON7 TAXON8 TAXON9 TAXON10; END; BEGIN CHARACTERS; [**+** Replace this character information with your character information.] DIMENSIONS NCHAR=100; FORMAT SYMBOLS="0123"; MATRIX TAXON1 012002000001?1020000102011111111111111111111111111 012002000001?1020000102011111111111111111111111111 TAXON2 10000000001000100001102311023100120101102012220120 10000000001000100001102311023100120101102012220120 TAXON3 12000112210012201301102032010230?01030201220221111 12000112210012201301102032010230?01030201220221111 TAXON4 10120220001021103101102033020102203030201022201111 10120220001021103101102033020102203030201022201111 TAXON5 12221120231220202222020103302010202221110201111021 12221120231220202222020103302010202221110201111021 TAXON6 03322212222332223101012220112012333322011101010111 03322212222332223101012220112012333322011101010111 TAXON7 02121120221102133111?10222201111020102322201020221 02121120221102133111?10222201111020102322201020221 TAXON8 20122210120202113111111022101021121123212332221121 20122210120202113111111022101021121123212332221121 TAXON9 20020021102320003111121222032201223221233221111111 20020021102320003111121222032201223221233221111111 TAXON10 30012001213230100201121112221021023332102102111211 30012001213230100201121112221021023332102102111211; END; BEGIN ASSUMPTIONS; [**+** Add in any options from your analysis here (e.g., ordered characters).] [**+** The following weighting sets provide for the incremental de-weighting of one character at a time. If your analysis has less than 100 characters, you should (temporarily) delete the WTSET's for the non-existant characters. For example, if you have 20 characters in your analysis, remove WTSET's 21.8 and above. If you do not do this, you'll get an "invalid character" error.] [If your analysis has more than 100 characters, first run the template as per normal. This will give you the importance values for the first 100 characters. Then alter the WTSET definitions below to refer to characters 101 through 200 (rather than 1 through 100). Only change the last number before the semicolons. For example, "WTSET '1.8' = 0.8: 1;" becomes "WTSET '1.8' = 0.8: 101;". After making those changes, run the analysis again. The importance values for characters 101 to 200 will be appended to the Distances file. Repeat this process as needed for characters above 200.] WTSET '1.8' = 0.8: 1; WTSET '1.6' = 0.6: 1; WTSET '1.4' = 0.4: 1; WTSET '1.2' = 0.2: 1; WTSET '1.0' = 0: 1; WTSET '2.8' = 0.8: 2; WTSET '2.6' = 0.6: 2; WTSET '2.4' = 0.4: 2; WTSET '2.2' = 0.2: 2; WTSET '2.0' = 0: 2; WTSET '3.8' = 0.8: 3; WTSET '3.6' = 0.6: 3; WTSET '3.4' = 0.4: 3; WTSET '3.2' = 0.2: 3; WTSET '3.0' = 0: 3; WTSET '4.8' = 0.8: 4; WTSET '4.6' = 0.6: 4; WTSET '4.4' = 0.4: 4; WTSET '4.2' = 0.2: 4; WTSET '4.0' = 0: 4; WTSET '5.8' = 0.8: 5; WTSET '5.6' = 0.6: 5; WTSET '5.4' = 0.4: 5; WTSET '5.2' = 0.2: 5; WTSET '5.0' = 0: 5; WTSET '6.8' = 0.8: 6; WTSET '6.6' = 0.6: 6; WTSET '6.4' = 0.4: 6; WTSET '6.2' = 0.2: 6; WTSET '6.0' = 0: 6; WTSET '7.8' = 0.8: 7; WTSET '7.6' = 0.6: 7; WTSET '7.4' = 0.4: 7; WTSET '7.2' = 0.2: 7; WTSET '7.0' = 0: 7; WTSET '8.8' = 0.8: 8; WTSET '8.6' = 0.6: 8; WTSET '8.4' = 0.4: 8; WTSET '8.2' = 0.2: 8; WTSET '8.0' = 0: 8; WTSET '9.8' = 0.8: 9; WTSET '9.6' = 0.6: 9; WTSET '9.4' = 0.4: 9; WTSET '9.2' = 0.2: 9; WTSET '9.0' = 0: 9; WTSET '10.8' = 0.8: 10; WTSET '10.6' = 0.6: 10; WTSET '10.4' = 0.4: 10; WTSET '10.2' = 0.2: 10; WTSET '10.0' = 0: 10; WTSET '11.8' = 0.8: 11; WTSET '11.6' = 0.6: 11; WTSET '11.4' = 0.4: 11; WTSET '11.2' = 0.2: 11; WTSET '11.0' = 0: 11; WTSET '12.8' = 0.8: 12; WTSET '12.6' = 0.6: 12; WTSET '12.4' = 0.4: 12; WTSET '12.2' = 0.2: 12; WTSET '12.0' = 0: 12; WTSET '13.8' = 0.8: 13; WTSET '13.6' = 0.6: 13; WTSET '13.4' = 0.4: 13; WTSET '13.2' = 0.2: 13; WTSET '13.0' = 0: 13; WTSET '14.8' = 0.8: 14; WTSET '14.6' = 0.6: 14; WTSET '14.4' = 0.4: 14; WTSET '14.2' = 0.2: 14; WTSET '14.0' = 0: 14; WTSET '15.8' = 0.8: 15; WTSET '15.6' = 0.6: 15; WTSET '15.4' = 0.4: 15; WTSET '15.2' = 0.2: 15; WTSET '15.0' = 0: 15; WTSET '16.8' = 0.8: 16; WTSET '16.6' = 0.6: 16; WTSET '16.4' = 0.4: 16; WTSET '16.2' = 0.2: 16; WTSET '16.0' = 0: 16; WTSET '17.8' = 0.8: 17; WTSET '17.6' = 0.6: 17; WTSET '17.4' = 0.4: 17; WTSET '17.2' = 0.2: 17; WTSET '17.0' = 0: 17; WTSET '18.8' = 0.8: 18; WTSET '18.6' = 0.6: 18; WTSET '18.4' = 0.4: 18; WTSET '18.2' = 0.2: 18; WTSET '18.0' = 0: 18; WTSET '19.8' = 0.8: 19; WTSET '19.6' = 0.6: 19; WTSET '19.4' = 0.4: 19; WTSET '19.2' = 0.2: 19; WTSET '19.0' = 0: 19; WTSET '20.8' = 0.8: 20; WTSET '20.6' = 0.6: 20; WTSET '20.4' = 0.4: 20; WTSET '20.2' = 0.2: 20; WTSET '20.0' = 0: 20; WTSET '21.8' = 0.8: 21; WTSET '21.6' = 0.6: 21; WTSET '21.4' = 0.4: 21; WTSET '21.2' = 0.2: 21; WTSET '21.0' = 0: 21; WTSET '22.8' = 0.8: 22; WTSET '22.6' = 0.6: 22; WTSET '22.4' = 0.4: 22; WTSET '22.2' = 0.2: 22; WTSET '22.0' = 0: 22; WTSET '23.8' = 0.8: 23; WTSET '23.6' = 0.6: 23; WTSET '23.4' = 0.4: 23; WTSET '23.2' = 0.2: 23; WTSET '23.0' = 0: 23; WTSET '24.8' = 0.8: 24; WTSET '24.6' = 0.6: 24; WTSET '24.4' = 0.4: 24; WTSET '24.2' = 0.2: 24; WTSET '24.0' = 0: 24; WTSET '25.8' = 0.8: 25; WTSET '25.6' = 0.6: 25; WTSET '25.4' = 0.4: 25; WTSET '25.2' = 0.2: 25; WTSET '25.0' = 0: 25; WTSET '26.8' = 0.8: 26; WTSET '26.6' = 0.6: 26; WTSET '26.4' = 0.4: 26; WTSET '26.2' = 0.2: 26; WTSET '26.0' = 0: 26; WTSET '27.8' = 0.8: 27; WTSET '27.6' = 0.6: 27; WTSET '27.4' = 0.4: 27; WTSET '27.2' = 0.2: 27; WTSET '27.0' = 0: 27; WTSET '28.8' = 0.8: 28; WTSET '28.6' = 0.6: 28; WTSET '28.4' = 0.4: 28; WTSET '28.2' = 0.2: 28; WTSET '28.0' = 0: 28; WTSET '29.8' = 0.8: 29; WTSET '29.6' = 0.6: 29; WTSET '29.4' = 0.4: 29; WTSET '29.2' = 0.2: 29; WTSET '29.0' = 0: 29; WTSET '30.8' = 0.8: 30; WTSET '30.6' = 0.6: 30; WTSET '30.4' = 0.4: 30; WTSET '30.2' = 0.2: 30; WTSET '30.0' = 0: 30; WTSET '31.8' = 0.8: 31; WTSET '31.6' = 0.6: 31; WTSET '31.4' = 0.4: 31; WTSET '31.2' = 0.2: 31; WTSET '31.0' = 0: 31; WTSET '32.8' = 0.8: 32; WTSET '32.6' = 0.6: 32; WTSET '32.4' = 0.4: 32; WTSET '32.2' = 0.2: 32; WTSET '32.0' = 0: 32; WTSET '33.8' = 0.8: 33; WTSET '33.6' = 0.6: 33; WTSET '33.4' = 0.4: 33; WTSET '33.2' = 0.2: 33; WTSET '33.0' = 0: 33; WTSET '34.8' = 0.8: 34; WTSET '34.6' = 0.6: 34; WTSET '34.4' = 0.4: 34; WTSET '34.2' = 0.2: 34; WTSET '34.0' = 0: 34; WTSET '35.8' = 0.8: 35; WTSET '35.6' = 0.6: 35; WTSET '35.4' = 0.4: 35; WTSET '35.2' = 0.2: 35; WTSET '35.0' = 0: 35; WTSET '36.8' = 0.8: 36; WTSET '36.6' = 0.6: 36; WTSET '36.4' = 0.4: 36; WTSET '36.2' = 0.2: 36; WTSET '36.0' = 0: 36; WTSET '37.8' = 0.8: 37; WTSET '37.6' = 0.6: 37; WTSET '37.4' = 0.4: 37; WTSET '37.2' = 0.2: 37; WTSET '37.0' = 0: 37; WTSET '38.8' = 0.8: 38; WTSET '38.6' = 0.6: 38; WTSET '38.4' = 0.4: 38; WTSET '38.2' = 0.2: 38; WTSET '38.0' = 0: 38; WTSET '39.8' = 0.8: 39; WTSET '39.6' = 0.6: 39; WTSET '39.4' = 0.4: 39; WTSET '39.2' = 0.2: 39; WTSET '39.0' = 0: 39; WTSET '40.8' = 0.8: 40; WTSET '40.6' = 0.6: 40; WTSET '40.4' = 0.4: 40; WTSET '40.2' = 0.2: 40; WTSET '40.0' = 0: 40; WTSET '41.8' = 0.8: 41; WTSET '41.6' = 0.6: 41; WTSET '41.4' = 0.4: 41; WTSET '41.2' = 0.2: 41; WTSET '41.0' = 0: 41; WTSET '42.8' = 0.8: 42; WTSET '42.6' = 0.6: 42; WTSET '42.4' = 0.4: 42; WTSET '42.2' = 0.2: 42; WTSET '42.0' = 0: 42; WTSET '43.8' = 0.8: 43; WTSET '43.6' = 0.6: 43; WTSET '43.4' = 0.4: 43; WTSET '43.2' = 0.2: 43; WTSET '43.0' = 0: 43; WTSET '44.8' = 0.8: 44; WTSET '44.6' = 0.6: 44; WTSET '44.4' = 0.4: 44; WTSET '44.2' = 0.2: 44; WTSET '44.0' = 0: 44; WTSET '45.8' = 0.8: 45; WTSET '45.6' = 0.6: 45; WTSET '45.4' = 0.4: 45; WTSET '45.2' = 0.2: 45; WTSET '45.0' = 0: 45; WTSET '46.8' = 0.8: 46; WTSET '46.6' = 0.6: 46; WTSET '46.4' = 0.4: 46; WTSET '46.2' = 0.2: 46; WTSET '46.0' = 0: 46; WTSET '47.8' = 0.8: 47; WTSET '47.6' = 0.6: 47; WTSET '47.4' = 0.4: 47; WTSET '47.2' = 0.2: 47; WTSET '47.0' = 0: 47; WTSET '48.8' = 0.8: 48; WTSET '48.6' = 0.6: 48; WTSET '48.4' = 0.4: 48; WTSET '48.2' = 0.2: 48; WTSET '48.0' = 0: 48; WTSET '49.8' = 0.8: 49; WTSET '49.6' = 0.6: 49; WTSET '49.4' = 0.4: 49; WTSET '49.2' = 0.2: 49; WTSET '49.0' = 0: 49; WTSET '50.8' = 0.8: 50; WTSET '50.6' = 0.6: 50; WTSET '50.4' = 0.4: 50; WTSET '50.2' = 0.2: 50; WTSET '50.0' = 0: 50; WTSET '51.8' = 0.8: 51; WTSET '51.6' = 0.6: 51; WTSET '51.4' = 0.4: 51; WTSET '51.2' = 0.2: 51; WTSET '51.0' = 0: 51; WTSET '52.8' = 0.8: 52; WTSET '52.6' = 0.6: 52; WTSET '52.4' = 0.4: 52; WTSET '52.2' = 0.2: 52; WTSET '52.0' = 0: 52; WTSET '53.8' = 0.8: 53; WTSET '53.6' = 0.6: 53; WTSET '53.4' = 0.4: 53; WTSET '53.2' = 0.2: 53; WTSET '53.0' = 0: 53; WTSET '54.8' = 0.8: 54; WTSET '54.6' = 0.6: 54; WTSET '54.4' = 0.4: 54; WTSET '54.2' = 0.2: 54; WTSET '54.0' = 0: 54; WTSET '55.8' = 0.8: 55; WTSET '55.6' = 0.6: 55; WTSET '55.4' = 0.4: 55; WTSET '55.2' = 0.2: 55; WTSET '55.0' = 0: 55; WTSET '56.8' = 0.8: 56; WTSET '56.6' = 0.6: 56; WTSET '56.4' = 0.4: 56; WTSET '56.2' = 0.2: 56; WTSET '56.0' = 0: 56; WTSET '57.8' = 0.8: 57; WTSET '57.6' = 0.6: 57; WTSET '57.4' = 0.4: 57; WTSET '57.2' = 0.2: 57; WTSET '57.0' = 0: 57; WTSET '58.8' = 0.8: 58; WTSET '58.6' = 0.6: 58; WTSET '58.4' = 0.4: 58; WTSET '58.2' = 0.2: 58; WTSET '58.0' = 0: 58; WTSET '59.8' = 0.8: 59; WTSET '59.6' = 0.6: 59; WTSET '59.4' = 0.4: 59; WTSET '59.2' = 0.2: 59; WTSET '59.0' = 0: 59; WTSET '60.8' = 0.8: 60; WTSET '60.6' = 0.6: 60; WTSET '60.4' = 0.4: 60; WTSET '60.2' = 0.2: 60; WTSET '60.0' = 0: 60; WTSET '61.8' = 0.8: 61; WTSET '61.6' = 0.6: 61; WTSET '61.4' = 0.4: 61; WTSET '61.2' = 0.2: 61; WTSET '61.0' = 0: 61; WTSET '62.8' = 0.8: 62; WTSET '62.6' = 0.6: 62; WTSET '62.4' = 0.4: 62; WTSET '62.2' = 0.2: 62; WTSET '62.0' = 0: 62; WTSET '63.8' = 0.8: 63; WTSET '63.6' = 0.6: 63; WTSET '63.4' = 0.4: 63; WTSET '63.2' = 0.2: 63; WTSET '63.0' = 0: 63; WTSET '64.8' = 0.8: 64; WTSET '64.6' = 0.6: 64; WTSET '64.4' = 0.4: 64; WTSET '64.2' = 0.2: 64; WTSET '64.0' = 0: 64; WTSET '65.8' = 0.8: 65; WTSET '65.6' = 0.6: 65; WTSET '65.4' = 0.4: 65; WTSET '65.2' = 0.2: 65; WTSET '65.0' = 0: 65; WTSET '66.8' = 0.8: 66; WTSET '66.6' = 0.6: 66; WTSET '66.4' = 0.4: 66; WTSET '66.2' = 0.2: 66; WTSET '66.0' = 0: 66; WTSET '67.8' = 0.8: 67; WTSET '67.6' = 0.6: 67; WTSET '67.4' = 0.4: 67; WTSET '67.2' = 0.2: 67; WTSET '67.0' = 0: 67; WTSET '68.8' = 0.8: 68; WTSET '68.6' = 0.6: 68; WTSET '68.4' = 0.4: 68; WTSET '68.2' = 0.2: 68; WTSET '68.0' = 0: 68; WTSET '69.8' = 0.8: 69; WTSET '69.6' = 0.6: 69; WTSET '69.4' = 0.4: 69; WTSET '69.2' = 0.2: 69; WTSET '69.0' = 0: 69; WTSET '70.8' = 0.8: 70; WTSET '70.6' = 0.6: 70; WTSET '70.4' = 0.4: 70; WTSET '70.2' = 0.2: 70; WTSET '70.0' = 0: 70; WTSET '71.8' = 0.8: 71; WTSET '71.6' = 0.6: 71; WTSET '71.4' = 0.4: 71; WTSET '71.2' = 0.2: 71; WTSET '71.0' = 0: 71; WTSET '72.8' = 0.8: 72; WTSET '72.6' = 0.6: 72; WTSET '72.4' = 0.4: 72; WTSET '72.2' = 0.2: 72; WTSET '72.0' = 0: 72; WTSET '73.8' = 0.8: 73; WTSET '73.6' = 0.6: 73; WTSET '73.4' = 0.4: 73; WTSET '73.2' = 0.2: 73; WTSET '73.0' = 0: 73; WTSET '74.8' = 0.8: 74; WTSET '74.6' = 0.6: 74; WTSET '74.4' = 0.4: 74; WTSET '74.2' = 0.2: 74; WTSET '74.0' = 0: 74; WTSET '75.8' = 0.8: 75; WTSET '75.6' = 0.6: 75; WTSET '75.4' = 0.4: 75; WTSET '75.2' = 0.2: 75; WTSET '75.0' = 0: 75; WTSET '76.8' = 0.8: 76; WTSET '76.6' = 0.6: 76; WTSET '76.4' = 0.4: 76; WTSET '76.2' = 0.2: 76; WTSET '76.0' = 0: 76; WTSET '77.8' = 0.8: 77; WTSET '77.6' = 0.6: 77; WTSET '77.4' = 0.4: 77; WTSET '77.2' = 0.2: 77; WTSET '77.0' = 0: 77; WTSET '78.8' = 0.8: 78; WTSET '78.6' = 0.6: 78; WTSET '78.4' = 0.4: 78; WTSET '78.2' = 0.2: 78; WTSET '78.0' = 0: 78; WTSET '79.8' = 0.8: 79; WTSET '79.6' = 0.6: 79; WTSET '79.4' = 0.4: 79; WTSET '79.2' = 0.2: 79; WTSET '79.0' = 0: 79; WTSET '80.8' = 0.8: 80; WTSET '80.6' = 0.6: 80; WTSET '80.4' = 0.4: 80; WTSET '80.2' = 0.2: 80; WTSET '80.0' = 0: 80; WTSET '81.8' = 0.8: 81; WTSET '81.6' = 0.6: 81; WTSET '81.4' = 0.4: 81; WTSET '81.2' = 0.2: 81; WTSET '81.0' = 0: 81; WTSET '82.8' = 0.8: 82; WTSET '82.6' = 0.6: 82; WTSET '82.4' = 0.4: 82; WTSET '82.2' = 0.2: 82; WTSET '82.0' = 0: 82; WTSET '83.8' = 0.8: 83; WTSET '83.6' = 0.6: 83; WTSET '83.4' = 0.4: 83; WTSET '83.2' = 0.2: 83; WTSET '83.0' = 0: 83; WTSET '84.8' = 0.8: 84; WTSET '84.6' = 0.6: 84; WTSET '84.4' = 0.4: 84; WTSET '84.2' = 0.2: 84; WTSET '84.0' = 0: 84; WTSET '85.8' = 0.8: 85; WTSET '85.6' = 0.6: 85; WTSET '85.4' = 0.4: 85; WTSET '85.2' = 0.2: 85; WTSET '85.0' = 0: 85; WTSET '86.8' = 0.8: 86; WTSET '86.6' = 0.6: 86; WTSET '86.4' = 0.4: 86; WTSET '86.2' = 0.2: 86; WTSET '86.0' = 0: 86; WTSET '87.8' = 0.8: 87; WTSET '87.6' = 0.6: 87; WTSET '87.4' = 0.4: 87; WTSET '87.2' = 0.2: 87; WTSET '87.0' = 0: 87; WTSET '88.8' = 0.8: 88; WTSET '88.6' = 0.6: 88; WTSET '88.4' = 0.4: 88; WTSET '88.2' = 0.2: 88; WTSET '88.0' = 0: 88; WTSET '89.8' = 0.8: 89; WTSET '89.6' = 0.6: 89; WTSET '89.4' = 0.4: 89; WTSET '89.2' = 0.2: 89; WTSET '89.0' = 0: 89; WTSET '90.8' = 0.8: 90; WTSET '90.6' = 0.6: 90; WTSET '90.4' = 0.4: 90; WTSET '90.2' = 0.2: 90; WTSET '90.0' = 0: 90; WTSET '91.8' = 0.8: 91; WTSET '91.6' = 0.6: 91; WTSET '91.4' = 0.4: 91; WTSET '91.2' = 0.2: 91; WTSET '91.0' = 0: 91; WTSET '92.8' = 0.8: 92; WTSET '92.6' = 0.6: 92; WTSET '92.4' = 0.4: 92; WTSET '92.2' = 0.2: 92; WTSET '92.0' = 0: 92; WTSET '93.8' = 0.8: 93; WTSET '93.6' = 0.6: 93; WTSET '93.4' = 0.4: 93; WTSET '93.2' = 0.2: 93; WTSET '93.0' = 0: 93; WTSET '94.8' = 0.8: 94; WTSET '94.6' = 0.6: 94; WTSET '94.4' = 0.4: 94; WTSET '94.2' = 0.2: 94; WTSET '94.0' = 0: 94; WTSET '95.8' = 0.8: 95; WTSET '95.6' = 0.6: 95; WTSET '95.4' = 0.4: 95; WTSET '95.2' = 0.2: 95; WTSET '95.0' = 0: 95; WTSET '96.8' = 0.8: 96; WTSET '96.6' = 0.6: 96; WTSET '96.4' = 0.4: 96; WTSET '96.2' = 0.2: 96; WTSET '96.0' = 0: 96; WTSET '97.8' = 0.8: 97; WTSET '97.6' = 0.6: 97; WTSET '97.4' = 0.4: 97; WTSET '97.2' = 0.2: 97; WTSET '97.0' = 0: 97; WTSET '98.8' = 0.8: 98; WTSET '98.6' = 0.6: 98; WTSET '98.4' = 0.4: 98; WTSET '98.2' = 0.2: 98; WTSET '98.0' = 0: 98; WTSET '99.8' = 0.8: 99; WTSET '99.6' = 0.6: 99; WTSET '99.4' = 0.4: 99; WTSET '99.2' = 0.2: 99; WTSET '99.0' = 0: 99; WTSET '100.8' = 0.8: 100; WTSET '100.6' = 0.6: 100; WTSET '100.4' = 0.4: 100; WTSET '100.2' = 0.2: 100; WTSET '100.0' = 0: 100; END; BEGIN PAUP; CLEARTREES NOWARN = YES; SET NOTIFYBEEP = NO; END; BEGIN TREES; [**+** Specify the most parsimonious tree here (and delete the sample tree given). This is the tree that all others will be compared against. If an analysis yields multiple equally parsimonious trees, run the CIR analysis multiple times, using each one of the best trees as the tree of comparison. Then compare the importance rankings as described in the accompanying instructions.] TRANSLATE 1 TAXON1, 2 TAXON2, 3 TAXON3, 4 TAXON4, 5 TAXON5, 6 TAXON6, 7 TAXON7, 8 TAXON8, 9 TAXON9, 10 TAXON10; TREE * SAMPLE = [&U] (1,(2,(3,(5,(((6,7),4),(8,(9,10))))))); END; BEGIN PAUP; [Saves the original 'best' tree specified above.] [**+** Change the following filepath to reflect your hard drive name and the folder you want the tree file stored in.] SAVETREES FILE = 'CLADISTICS:DD METHODS:TREES' ROOT = NO REPLACE = YES; END;