A big part of my role in the Smith Lab has been writing useful tools and applications to make Array Tomography a faster, more automated and more useful tool. Occasionally I come across another lab who can use some of these tools for Array Tomography-related uses or (even cooler) something entirely unrelated.

In case it comes up, I'm a big open source guy so please feel free to use, redistribute, etc.

MultiStackReg v1.4 - Now just drag/drop into your plugins folder! - Prior to Array Tomography, our lab had been using Stackreg as an excellent and reliable alignment tool for ImageJ. As we began to image the same tissue repeatedly, we needed to be able to save and load the alignment parameters to ensure that images taken in different sessions were aligned the same way. MultiStackReg is just a slight alteration to Stackreg to allow for save/load functionality. (Source Code)