Publications:

  1. E. F. Koslover, A. J. Spakowitz. Twist and tension-mediated elastic coupling between DNA-binding proteins. Phys. Rev. Lett., 102, 178102 (2009).

  2. S. Mehraeen, B. Sudhanshu, E. F. Koslover, A. J. Spakowitz. End-to-end distribution for a wormlike chain in arbitrary dimensions. Phys. Rev. E, 77, 061803 (2008).

  3. H. Shroff, D. Sivak, J. J. Siegel, A. L. McEvoy, M. Siu, A. J. Spakowitz, P. L. Geissler, J. Liphardt. Optical measurement of mechanical forces inside short DNA loops. Biophys. J., 94, 6, 2179 (2008).

  4. L. R. Comolli, A. J. Spakowitz, C. E. Siegerist, P. J. Jardine, S. Grimes, D. L. Anderson, B. Bustamante, K. H. Downing. Three-dimensional architecture of the bacteriophage phi 29 packaged genome and elucidation of its packaging process. Virology, 371, 2, 267 (2008).

  5. P. A. Wiggins, T. Van der Heijden, F. Moreno-Herrero, A. J. Spakowitz, R. Phillips, J. Widom, C. Dekker, P. C. Nelson. High flexibility of DNA on short length scales probed by atomic force microscopy. Nature Nanotechnology, 1, 2, 137 (2006).

  6. S. Mihardja, A. J. Spakowitz, Y. L. Zhang, C. Bustamante. Effect of force on mononucleosomal dynamics. PNAS, 103, 15871 (2006).

  7. A. J. Spakowitz. Wormlike chain statistics with twist and fixed ends. Europhys. Lett., 73, 684 (2006).

  8. A. J. Spakowitz and Z.-G. Wang. End-to-end distance vector distribution with fixed end orientations for the wormlike chain model. Phys. Rev. E, 72, 041802 (2005).

  9. Justin S. Bois, Suvir Venkataraman, Harry M. T. Choi, Andrew J. Spakowitz, Zhen-Gang Wang and Niles A. Pierce. Topological constraints in nucleic acid hybridization kinetics. NAR, 33, 13, 4090 (2005).

  10. H. Shroff, B. M. Reinhard, M. Siu, H. Agarwal, A. Spakowitz, J. Liphardt. Biocompatible Force Sensor with Optical Readout and Dimensions of 6 nm3. Nano Letters, 5, 7, 1509 (2005).

  11. A. J. Spakowitz and Z.-G. Wang. DNA Packaging in Bacteriophage: Is Twist Important? Biophys. J., 88, 3912 (2005).

  12. A. J. Spakowitz. Semiflexible Polymers: Fundamental Theory and Applications in DNA Packaging. Ph.D. Thesis, 2004.

  13. A. J. Spakowitz and Z.-G. Wang. Exact results for a semiflexible polymer chain in an aligning field. Macromolecules, 37, 15, 5814 (2004).

  14. A. J. Spakowitz and Z.-G. Wang. Semiflexible polymer solutions. I. phase behavior and single-chain statistics. J. Chem. Phys., 119, 24, 13113 (2003).

  15. A. J. Spakowitz and Z.-G. Wang. Semiflexible polymer confined to a spherical surface. Phys. Rev. Lett., 91, 16, 166102 (2003).

  16. A. J. Spakowitz and Z.-G. Wang. Free expansion of elastic filaments. Phys. Rev. E, 6406, 6, 061802 (2001).