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Publications
2008
Jeffrey SS. Cancer biomarker profiling with microRNAs. Nature Biotechnol. 2008 Apr;26(4):400-401,PMID: 18392022 Abstract
Korsching E, Jeffrey S, Meinerz W, Decker T, Boecker W, Buerger H. Basal carcinomas of the breast revisited - an old entity with new interpretations. J Clin Pathol. 2008 Mar 6; [Epub ahead of print]PMID: 18326009 Abstract
Kohrt HE, Olshen RA, Bermas HR, Goodson WH, Wood DJ, Henry S, Rouse RV, Bailey L, Philben VJ, Dirbas FM, Dunn JJ, Johnson DL, Wapnir IL, Carlson RW, Stockdale FE, Hansen NM, Jeffrey SS. New models and online calculator for predicting non-sentinel lymph node status in sentinel lymph node positive breast cancer patients. BMC Cancer. 2008 Mar 4;8(1):66.PMID: 18315887 Abstract
Han W, Jung EM, Cho J, Lee JW, Hwang KT, Yang SJ, Kang JJ, Bae JY, Jeon YK, Park IA, Nicolau M, Jeffrey SS, Noh DY. DNA copy number alterations and expression of relevant genes in triple-negative breast cancer. Genes Chromosomes Cancer. 2008 Mar 3;47(6):490-499, PMID: 18314908 Abstract
Wang Y, Ikeda DM, Narasimhan B, Longacre TA, Bleicher RJ, Pal S, Jackman RJ, Jeffrey SS. Estrogen receptor-negative invasive breast cancer: imaging features of tumors with and without human epidermal growth factor receptor type 2 overexpression. Radiology. 2008 Feb;246(2):367-75.PMID: 18180338. Abstract
van den Bosch M, Daniel B, Rieke V, Butts-Pauly K, Kermit E, Jeffrey S. MRI-guided radiofrequency ablation of breast cancer: preliminary clinical experience. J Magn Reson Imaging. 2008 Jan;27(1):204-8.PMID: 16683117. Abstract
2007
Ribeiro-Silva A, Zhang H, Jeffrey SS. RNA extraction from ten year old formalin-fixed paraffin-embedded breast cancer samples: a comparison of column purification and magnetic bead-based technologies. BMC Mol Biol. 2007 Dec 21;8:118.PMID: 18154675 Abstract
Langerød A, Zhao H, Borgan Ø, Nesland JM, Bukholm IR, Ikdahl T, Kåresen R, Børresen-Dale AL, Jeffrey SS. TP53 mutation status and gene expression profiles are powerful prognostic markers of breast cancer. Breast Cancer Res. 2007;9(3):R30.PMID: 17504517 Abstract
Dairkee SH, Nicolau M, Sayeed A, Champion S, Ji Y, Moore DH, Yong B, Meng Z, Jeffrey SS. Oxidative stress pathways highlighted in tumor cell immortalization: association with breast cancer outcome. Oncogene. 2007 Sep 20;26(43):6269-79.PMID: 17471242 Abstract
Fu J, Jeffrey SS. Transcriptomic signatures in breast cancer. Mol Biosyst. 2007 Jul;3(7):466-72. Epub 2007 Jun 5. Review. PMID: 17579771. Abstract
Nicolau M, Tibshirani R, Børresen-Dale AL, Jeffrey SS. Disease-specific genomic analysis: identifying the signature of pathologic biology. Bioinformatics. 2007 Apr 15;23(8):957-65. Epub 2007 Feb 3. PMID: 17277331. Abstract
2006
Kapp AV, Jeffrey SS, Langerød A, Børresen-Dale AL, Han W, Noh DY, Bukholm IR, Nicolau M, Brown PO, Tibshirani R. Discovery and validation of breast cancer subtypes. BMC Genomics. 2006 Sep 11;7:231. Erratum in: BMC Genomics. 2007 Apr 13;8(1):101. PMID: 16965636. Abstract
van den Bosch MA, Daniel BL, Pal S, Nowels KW, Birdwell RL, Jeffrey SS, Ikeda DM. MRI-guided needle localization of suspicious breast lesions: results of a freehand technique. Eur Radiol. 2006 Aug;16(8):1811-7. Epub 2006 May 9. PMID: 1668311. Abstract
Helland A, Johnsen H, Frøyland C, Landmark HB, Saetersdal AB, Holmen MM, Gjertsen T, Nesland JM, Ottestad W, Jeffrey SS, Ottestad LO, Rodningen OK, Sherlock G, Børresen-Dale AL. Radiation-induced effects on gene expression: an in vivo study on breast cancer. Radiother Oncol. 2006 Aug;80(2):230-5. Epub 2006 Aug 4. PMID: 16890317. Abstract
Erler JT, Bennewith KL, Nicolau M, Dornhöfer N, Kong C, Le QT, Chi JT, Jeffrey SS, Giaccia AJ. Lysyl oxidase is essential for hypoxia-induced metastasis. Nature. 2006 Apr 27;440(7088):1222-6. PMID: 16642001. Abstract
Talasaz AH, Powell AA, Stahl P, Ronaghi M, Jeffrey SS, Mindrinos M, Davis RW. Cell trapping in activated micropores for functional analysis. Conf Proc IEEE Eng Med Biol Soc. 2006;1:1838-41. Review. PMID: 17945673. Abstract
2005
Jessani N, Niessen S, Wei BQ, Nicolau M, Humphrey M, Ji Y, Han W, Noh DY, Yates JR 3rd, Jeffrey SS, Cravatt BF. A streamlined platform for high-content functional proteomics of primary human specimens. Nat Methods. 2005 Sep;2(9):691-7. PMID: 16118640. Abstract
Espinosa LA, Daniel BL, Jeffrey SS, Nowels KW, Ikeda DM. MRI features of mucosa-associated lymphoid tissue lymphoma in the breast. AJR Am J Roentgenol. 2005 Jul;185(1):199-202. No abstract available. PMID: 15972423. Abstract
Reynolds P, Hurley SE, Petreas M, Goldberg DE, Smith D, Gilliss D, Mahoney ME, Jeffrey SS. Adipose levels of dioxins and risk of breast cancer. Cancer Causes Control. 2005 Jun;16(5):525-35. PMID: 15986107. Abstract
Jeffrey SS, Lønning PE, Hillner BE. Genomics-based prognosis and therapeutic prediction in breast cancer. J Natl Compr Canc Netw. 2005 May;3(3):291-300. Review. PMID: 16002001. Abstract
Wallace AM, Daniel BL, Jeffrey SS, Birdwell RL, Nowels KW, Dirbas FM, Schraedley-Desmond P, Ikeda DM. Rates of reexcision for breast cancer after magnetic resonance imaging-guided bracket wire localization. J Am Coll Surg. 2005 Apr;200(4):527-37. PMID: 15804466. Abstract
2004
Dirbas FM, Jeffrey SS, Goffinet DR. The evolution of accelerated, partial breast irradiation as a potential treatment option for women with newly diagnosed breast cancer considering breast conservation. Cancer Biother Radiopharm. 2004 Dec;19(6):673-705. Review. PMID: 15665616. Abstract
Offodile RS, Daniel BL, Jeffrey SS, Wapnir I, Dirbas FM, Ikeda DM. Magnetic resonance imaging of suspicious breast masses seen on one mammographic view. Breast J. 2004 Sep-Oct;10(5):416-22. PMID: 15327495. Abstract
Dairkee SH, Ji Y, Ben Y, Moore DH, Meng Z, Jeffrey SS. A molecular 'signature' of primary breast cancer cultures; patterns resembling tumor tissue. BMC Genomics. 2004 Jul 19;5(1):47. PMID: 15260889. Abstract
Zhao H, Langerød A, Ji Y, Nowels KW, Nesland JM, Tibshirani R, Bukholm IK, Kåresen R, Botstein D, Børresen-Dale AL, Jeffrey SS. Different gene expression patterns in invasive lobular and ductal carcinomas of the breast.Mol Biol Cell. 2004 Jun;15(6):2523-36. Epub 2004 Mar 19. PMID: 15034139. Abstract
Petreas M, Smith D, Hurley S, Jeffrey SS, Gilliss D, Reynolds P. Distribution of persistent, lipid-soluble chemicals in breast and abdominal adipose tissues: lessons learned from a breast cancer study. Cancer Epidemiol Biomarkers Prev. 2004 Mar;13(3):416-24. PMID: 15006918. Abstract
2003
Smitt MC, Nowels K, Carlson RW, Jeffrey SS.Predictors of reexcision findings and recurrence after breast conservation.Int J Radiat Oncol Biol Phys. 2003 Nov 15;57(4):979-85. PMID: 14575828. Abstract
Jeffrey SS, Pollack JR. The diagnosis and management of pre-invasive breast disease: promise of new technologies in understanding pre-invasive breast lesions. Breast Cancer Res. 2003;5(6):320-8. Epub 2003 Oct 9. Review. PMID: 14580250. Abstract
2002
Zhao H, Hastie T, Whitfield ML, Børresen-Dale AL, Jeffrey SS. Optimization and evaluation of T7 based RNA linear amplification protocols for cDNA microarray analysis. BMC Genomics. 2002 Oct 30;3(1):31. PMID: 12445333. Abstract
Pollack JR, Sørlie T, Perou CM, Rees CA, Jeffrey SS, Lonning PE, Tibshirani R, Botstein D, Børresen-Dale AL, Brown PO. Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors. Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):12963-8. Epub 2002 Sep 24. PMID: 12297621. Abstract
Qayyum A, Birdwell RL, Daniel BL, Nowels KW, Jeffrey SS, Agoston TA, Herfkens RJ. MR imaging features of infiltrating lobular carcinoma of the breast: histopathologic correlation. AJR Am J Roentgenol. 2002 May;178(5):1227-32. PMID: 11959737. Abstract
Jeffrey SS, Fero MJ, Børresen-Dale AL, Botstein D. Expression array technology in the diagnosis and treatment of breast cancer. Mol Interv. 2002 Apr;2(2):101-9. Review. PMID: 14993355. Abstract
2001
Benz CC, Hilakivi-Clarke L, Conzen S, Dorn RV, Fleming GF, Grant K, Greene G, Hellman S, Henderson C, Hoover R, Hryniuk W, Jeffrey S, Lippman M, Lung J, Mitchell M, Pike M. Expedition inspiration consensus 2001. Breast Cancer Res Treat. 2001 Dec;70(3):213-9. No abstract available. PMID: 11804185. Abstract
Sørlie T, Perou CM, Tibshirani R, Aas T, Geisler S, Johnsen H, Hastie T, Eisen MB, van de Rijn M, Jeffrey SS, Thorsen T, Quist H, Matese JC, Brown PO, Botstein D, Eystein Lønning P, Børresen-Dale AL. Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. Proc Natl Acad Sci U S A. 2001 Sep 11;98(19):10869-74. PMID: 11553815. Abstract
Birdwell RL, Smith KL, Betts BJ, Ikeda DM, Strauss HW, Jeffrey SS. Breast cancer: variables affecting sentinel lymph node visualization at preoperative lymphoscintigraphy. Radiology. 2001 Jul;220(1):47-53. PMID: 11425971. Abstract
Daniel BL, Birdwell RL, Butts K, Nowels KW, Ikeda DM, Heiss SG, Cooper CR, Jeffrey SS, Dirbas FM, Herfkens RJ. Freehand iMRI-guided large-gauge core needle biopsy: a new minimally invasive technique for diagnosis of enhancing breast lesions. J Magn Reson Imaging. 2001 Jun;13(6):896-902. PMID: 11382950. Abstract
Favret AM, Carlson RW, Goffinet DR, Jeffrey SS, Dirbas FM, Stockdale FE. Locally advanced breast cancer: is surgery necessary? Breast J. 2001 Mar-Apr;7(2):131-7. PMID: 11328324. Abstract
2000
Vokach-Brodsky L, Jeffrey SS, Lemmens HJ, Brock-Utne JG. Isosulfan blue affects pulse oximetry. Anesthesiology. 2000 Oct;93(4):1002-3. PMID: 11020754. Abstract
Perou CM, Sørlie T, Eisen MB, van de Rijn M, Jeffrey SS, Rees CA, Pollack JR, Ross DT, Johnsen H, Akslen LA, Fluge O, Pergamenschikov A, Williams C, Zhu SX, Lønning PE, Børresen-Dale AL, Brown PO, Botstein D. Molecular portraits of human breast tumours. Nature. 2000 Aug 17;406(6797):747-52. PMID: 10963602. Abstract
Jeffrey SS, Jones SB, Smith KL. Controversies in sentinel lymph node biopsy for breast cancer. Cancer Biother Radiopharm. 2000 Jun;15(3):223-33. Review. PMID: 10941529. Abstract
Ross DT, Scherf U, Eisen MB, Perou CM, Rees C, Spellman P, Iyer V, Jeffrey SS, Van de Rijn M, Waltham M, Pergamenschikov A, Lee JC, Lashkari D, Shalon D, Myers TG, Weinstein JN, Botstein D, Brown PO. Systematic variation in gene expression patterns in human cancer cell lines. Nat Genet. 2000 Mar;24(3):227-35. PMID: 10700174. Abstract
Wolden SL, Hancock SL, Carlson RW, Goffinet DR, Jeffrey SS, Hoppe RT. Management of breast cancer after Hodgkin's disease.J Clin Oncol. 2000 Feb;18(4):765-72. PMID: 10673517. Abstract
Leong CS, Daniel BL, Herfkens RJ, Birdwell RL, Jeffrey SS, Ikeda DM, Sawyer-Glover AM, Glover GH. Characterization of breast lesion morphology with delayed 3DSSMT: an adjunct to dynamic breast MRI. J Magn Reson Imaging. 2000 Feb;11(2):87-96. PMID: 10713939. Abstract
1999
Jeffrey SS, Birdwell RL, Ikeda DM, Daniel BL, Nowels KW, Dirbas FM, Griffey SM. Radiofrequency ablation of breast cancer: first report of an emerging technology. Arch Surg. 1999 Oct;134(10):1064-8. Abstract
Pollack JR, Perou CM, Alizadeh AA, Eisen MB, Pergamenschikov A, Williams CF, Jeffrey SS, Botstein D, Brown PO. Genome-wide analysis of DNA copy-number changes using cDNA microarrays. Nat Genet. 1999 Sep;23(1):41-6. PMID: 10471496. Abstract
Perou CM, Jeffrey SS, van de Rijn M, Rees CA, Eisen MB, Ross DT, Pergamenschikov A, Williams CF, Zhu SX, Lee JC, Lashkari D, Shalon D, Brown PO, Botstein D. Distinctive gene expression patterns in human mammary epithelial cells and breast cancers. Proc Natl Acad Sci U S A. 1999 Aug 3;96(16):9212-7. PMID: 10430922. Abstract
1998 & Prior
Daniel BL, Yen YF, Glover GH, Ikeda DM, Birdwell RL, Sawyer-Glover AM, Black JW, Plevritis SK, Jeffrey SS, Herfkens RJ. Breast disease: dynamic spiral MR imaging. Radiology. 1998 Nov;209(2):499-509. PMID: 9807580. Abstract
Daniel BL, Birdwell RL, Ikeda DM, Jeffrey SS, Black JW, Block WF, Sawyer-Glover AM, Glover GH, Herfkens RJ. Breast lesion localization: a freehand, interactive MR imaging-guided technique. Radiology. 1998 May;207(2):455-63. PMID: 9577495. Abstract
Daniel BL, Jeffrey SS, Birdwell RL, Ikeda DM, Sawyer-Glover AM, Herfkens RJ. Three-dimensional shaded-surface rendering of MR images of the breast: technique, applications, and impact on surgical management of breast disease. Radiographics. 1998 Mar-Apr;18(2):483-96. PMID: 9536491. Abstract
Birdwell RL, Ikeda DM, Jeffrey SS, Jeffrey RB Jr. Preliminary experience with power Doppler imaging of solid breast masses. AJR Am J Roentgenol. 1997 Sep;169(3):703-7. PMID: 9275882.
Birdwell RL, Ikeda DM, Jeffrey SS, Jeffrey. Value of sonographic identification of breast masses in excised specimens in the breast imagine department. Breast dis. 1996;9:93-9.
Mortensen CL, Edmonds PD, Gorfu Y, Hill JR, Jensen JF, Schattner P, Shifrin LA, Valdes AD, Jeffrey SS, Esserman LJ. Ultrasound tissue characterization of breast biopsy specimens: expanded study. Ultrason Imaging. 1996 Jul;18(3):215-30. PMID: 9123674.
Jeffrey SS, Goodson WH 3rd, Ikeda DM, Birdwell RL, Bogetz MS. Axillary lymphadenectomy for breast cancer without axillary drainage. Arch Surg. 1995 Aug;130(8):909-12; discussion 912-3. PMID: 7632155.
Smitt MC, Nowels KW, Zdeblick MJ, Jeffrey S, Carlson RW, Stockdale FE, Goffinet DR. The importance of the lumpectomy surgical margin status in long-term results of breast conservation. Cancer. 1995 Jul 15;76(2):259-67. PMID: 8625101.
Deveney CW, Deveney KE, Stark D, Moss A, Stein S, Way LW. Resection of gastrinomas. Ann Surg. 1983 Oct;198(4):546-53. PMID: 6138003Deveney CW, Stein S, Way LW. Cimetidine in the treatment of Zollinger-Ellison syndrome. Am J Surg. 1983 Jul;146(1):116-23. PMID: 6869669
Glick PL, Pellegrini CA, Stein S, Way LW. Abdominal abscess. A surgical strategy. Arch Surg. 1983 May;118(5):646-50. PMID: 6838370.
Morse SA, Stein S, Hines J. Glucose metabolism in Neisseria gonorrhoeae. J Bacteriol. 1974 Nov;120(2):702-14. PMID: 4156358.
Raffel C, Stein S, Kaempfer R. Role for heme in mammalian protein synthesis: activation of an initiation factor. Proc Natl Acad Sci U S A. 1974 Oct;71(10):4020-24. PMID: 4530282.
Martin RG, Stein S. Resting state in normal and simian virus 40 transformed Chinese hamster lung cells. Proc Natl Acad Sci U S A. 1976 May;73(5):1655-9. PMID: 179093.
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