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Noah A Rosenberg
+1 650 721 2599 (office phone)
+1 650 724 5122 (lab phone)
+1 650 724 5114 (fax)
Lab: 339 Herrin Labs
Office: 339A Herrin Labs
Mailing address
Department of Biology
Stanford University
371 Serra Mall
Stanford, CA 94305-5020 USA
Last modified 12-11-2012 |
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| Postdocs | |
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Michael
Blum (Nov 2005 - Sep 2006). Michael received an M.Sc. in applied
mathematics from the University of Grenoble (2002) and a Ph.D. in applied
statistics from the Institut National Polytechnique de Grenoble (2005),
where he worked with Prof. Olivier Francois. In the lab, his research
interests focused on coalescent properties of ancestral lineages,
theoretical population genetics, and mathematical models for phylogenetic
tree balance. After leaving the lab, Michael began work as a CNRS
Associate Scientist in the TIMC-IMAG Laboratory, University of Grenoble.
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Erkan Buzbas (Jul 2009 - Aug
2012). Erkan received a B.S. in chemistry (2000) and M.S. in
Environmental Sciences (2003) from Bosphorus University, and an M.S. in
statistics (2007) and Ph.D. in bioinformatics and computational biology
(2009) from the University of Idaho, where he was a student with
Prof. Paul Joyce. His research interests in the lab focused on balancing
selection models, approximate Bayesian computation, and inference problems
in theoretical population genetics. After leaving the lab, Erkan joined
the Department of Statistical Science at the University of Idaho as
Assistant Professor.
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James
Degnan (Jul 2007 - Sep 2008). James joined the lab after
receiving his B.A. in mathematics and philosophy and Ph.D. in mathematics
and statistics (2005) from the University of New Mexico, under the
supervision of Prof. Laura Salter Kubatko. In the lab, James's research
focused on the mathematics of discordance between gene trees and species
trees, species tree inference methods, and statistical methods in human
population genetics. After leaving the lab, James started a position as a
Lecturer in the Department of Mathematics and Statistics at the University
of Canterbury, where he is now Senior Lecturer.
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Mattias
Jakobsson (Sep 2005 - Mar 2008). Mattias received his B.S. in
mathematics and biology and his Ph.D. in biology (2005) from Lund
University, under the supervision of Prof. Torbjorn Sall. In the lab,
Mattias's interests focused on human population genetics, methods for the
analysis of population structure, and theoretical properties of founder
events and bottlenecks. From 2007-2008, his work was supported by a
University of Michigan Center for Genetics in Health and Medicine
Postdoctoral Fellowship. After leaving the lab, Mattias joined the
Department of Evolutionary Biology at Uppsala University as Assistant
Professor.
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Trevor Pemberton
(Mar 2008 - Dec 2012). Trevor earned his B.Sc. in molecular genetics
(2000) and D.Phil. in biochemistry (2004) from the University of Sussex.
He joined the lab after a postdoctoral fellowship with Prof. Pragna Patel
at the University of Southern California. In the lab, Trevor focused on
problems connecting patterns of genetic variation to the search for
disease genes, on human microsatellite variation, and on the structure and
application of genetic variation in the population of India. From
2010-2011, his work was supported by a University of Michigan Center for
Genetics in Health and Medicine Postdoctoral Fellowship. After leaving
the lab, Trevor accepted a position as Assistant Professor of Biochemistry
and Medical Genetics at the University of Manitoba.
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Paul Scheet (Sep
2006 - Jul 2008). Paul received his B.S. in biology from Washington
University (1995), his M.S. in statistics from the University of Iowa
(2000), and his Ph.D. in statistics from the University of Washington
(2006) under the direction of Prof. Matthew Stephens. His research
interests in the lab focused on haplotype variation, human population
genetics, and genotype imputation methods in diverse human populations.
After leaving the lab, Paul began a faculty position as Assistant
Professor in the Department of Epidemiology at the University of Texas MD
Anderson Cancer Center.
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Cuong Than
(Nov 2009 - Sep 2012). Cuong earned his B.S. in computer science from
Hanoi University of Technology (2003) and his M.S. (2008) and Ph.D. (2009)
in computer science from Rice University, where he worked with Prof. Luay
Nakhleh. His research in the lab focused on algorithms in bioinformatics
and phylogenetics, with a particular emphasis on the
minimize-deep-coalescences algorithm for species tree inference. After
leaving the lab, Cuong continued in his postdoctoral studies at the
Faculty of Computer Science, University of Tuebingen, under the
supervision of Prof. Daniel Huson.
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Paul Verdu (Sep 2009 - Sep 2012). Paul received his M.S. in
genetics from the University of Paris 7 (2005) and his Ph.D. in
anthropological genetics at the University of Paris 6 (2009) under the
direction of Prof. Evelyne Heyer. Paul's work in the lab examined genetic
admixture and demography in a variety of groups, including the population
of Cape Verde, Native Americans, and the Pygmy populations of central
Africa. He also focused on admixture modeling, human spatial variation,
sociogenetics, and the relationship between genetic and linguistic
variation. After leaving the lab, Paul began a faculty position as CNRS
Associate Scientist at the Musee d'Histoire Naturelle in Paris.
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PhD students | |
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Mike DeGiorgio
(Apr 2007 - Aug 2011). Mike received his B.S. in mathematics and computer
Science from the University of Central Florida (2006) and his M.S. in
bioinformatics (2008) and Ph.D. in bioinformatics from the University of
Michigan (2011). His research interests in the lab focused on statistical
methods for the analysis of human genetic variation, serial founder models
for human migrations, and methods for species tree inference in the
presence of gene tree discordance. Mike was supported in the lab by a
Rackham Graduate School Merit Fellowship and a Genome Science Training
Program graduate fellowship. His Ph.D. thesis in bioinformatics, entitled
" Genetic variation and modern human origins," was recognized by the
Program in Biomedical Sciences Graduate Student Award for Excellence in
Research, and was named honorable mention for the ProQuest Distinguished
Dissertation Award. After leaving the lab, Mike joined the lab of Rasmus
Nielsen in the Department of Integrative Biology, University of
California, Berkeley, supported by a National Science Foundation
Postdoctoral Fellowship in Biology. |
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Lucy Huang (Nov
2006 - Dec 2011). Lucy received her B.S. in mathematics from the
University of Chicago (2005) and her M.S. in biostatistics (2007) and
Ph.D. in bioinformatics (2011) from the University of Michigan. Her
research interests in the lab focused on a variety of aspects of genotype
imputation, and on the relationship of population genetics to disease-gene
mapping. Her Ph.D. thesis in bioinformatics (2011) was entitled " Genotype
imputation in worldwide human populations: empirical and theoretical
approaches." Lucy was supported during her Ph.D. by a Rackham Graduate
School Predoctoral Fellowship. After leaving the lab, Lucy began work as
an Associate at McKinsey and Company in Chicago.
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Zachary
Szpiech (Dec 2007 - Sep 2012). Zach completed his B.S. in
mathematics at the University of Michigan (2007), working during his
senior year in the Rosenberg lab. He completed his M.S. in bioinformatics
(2009) and Ph.D. in bioinformatics (2012) at the University of
Michigan. Zach's research interests in the lab focused on theoretical,
empirical, and statistical aspects of private alleles. His Ph.D. thesis
in bioinformatics, entitled " Human migration, population divergence, and
the accumulation of deleterious alleles: insights from private genetic
variation and whole-exome sequencing," was supported by graduate
fellowships from the University of Michigan Bioinformatics and Genome
Science Training Programs. After leaving the lab, Zach joined the lab of
Ryan Hernandez in the Department of Bioengineering and Therapeutic
Sciences at the University of California, San Francisco.
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Chaolong Wang, (Jan
2009 - Sep 2012). Chaolong earned his B.S. in Physics from Peking
University (2008), and his M.A. in statistics (2011), M.S. in
bioinformatics (2011), and Ph.D. in bioinformatics (2012) from the
University of Michigan. In the lab, Chaolong's research interests focused
on statistical analysis of the relationship between genes and geography in
human populations, and on a maximum-likelihood method for the analysis of
allelic dropout. His Ph.D. thesis in bioinformatics, " Statistical methods
for analyzing human genetic variation in diverse populations," was
supported by a Rackham Graduate School Predoctoral Fellowship and a Howard
Hughes Medical Institute International Student Research Fellowship. After
leaving the lab, Chaolong began work as a postdoctoral fellowship in the
labs of Liming Liang and Xihong Lin in the Department of Biostatistics,
Harvard School of Public Health.
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| Master's
students | |
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Laura Helmkamp (Aug 2010 - Aug 2011). Laura completed her
B.S. in mathematics and chemistry at the University of Florida (2010) and
her M.S. in biostatistics at the University of Michigan (2012). Her work
as a research assistant in the lab focused on evaluating the statistical
properties of algorithms that use gene trees to estimate species trees,
with an emphasis on consensus methods. After leaving the lab, she
continued in her M.S. studies and began work as a data analyst in the
Division of Population Health Sciences at Wayne State University.
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Jenna VanLiere (Sep 2006 - Apr 2008). Jenna completed her B.S. in
mathematics at Duke University (2004), and her M.S. in bioinformatics (2008)
and M.D. (2010) at the University of Michigan. In the lab, her research
focused on population genetics in relation to the identification of
disease genes, with an emphasis on linkage disequilibrium and replication
of genetic association studies. Her work was supported by a fellowship
from the Genome Science Training Program. After leaving the lab, Jenna
completed her medical training at the University of Michigan Medical
School and continued in an internal medicine residency at the University
of Maryland School of Medicine.
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Undergraduates | |
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Hanna Astephan (Oct 2010 - Apr 2011). Hanna performed research in
the lab as a junior majoring in mathematics at the University of Michigan.
Her work focused on mathematical models of private haplotype variation.
After leaving the lab, Hanna continued in her studies at Michigan.
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Amy Goldberg (Apr 2011 - Aug 2011). Amy performed research in the
lab as a senior majoring in biological anthropology and mathematics at the
University of Michigan. Her work in the lab focused on admixture in human
populations. After graduating from Michigan in 2011, Amy rejoined the lab
as a Ph.D. student in the ecology and evolution program at Stanford
University.
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Ivana Jankovic (Apr 2008 - May 2010). Ivana performed research in
the lab as a junior and senior majoring in molecular and cellular biology
at the University of Michigan. Her work in the lab focused on statistics
for analyzing genetic variation in related individuals. After graduating
from Michigan in 2010, Ivana enrolled as an MD/PhD student at the
University of California, Los Angeles, where she is now completing her
Ph.D. in the laboratory of Dan Geschwind.
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Shashir Reddy (Sep 2008 - Jan 2010). Shashir performed research in
the lab as a junior and senior majoring in mathematics. His work in the
lab focused on mathematical properties of homozygosity and heterozygosity.
After graduating from Michigan in 2010, Shashir enrolled in a
post-baccalaureate program in computer science at Ohio State University.
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Zachary Szpiech (Sep 2006 - Aug 2007). Zach performed research in
the lab as a senior majoring in mathematics. His work in the lab
focused on software for analyzing private allelic variation. After
graduating from Michigan in 2007, Zach rejoined the lab as a Ph.D. student
in bioinformatics.
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Randa Tao (Feb 2006 - Jun 2006). Randa performed research in the
lab as an undergraduate majoring in ecology and evolutionary biology. Her
work in the lab focused on mathematical models of the discordance of gene
trees and species trees. After graduating from Michigan in 2006, Randa
enrolled as a medical student at the Mount Sinai School of Medicine.
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Eric Kalosa-Kenyon (Jun 2010 - Aug 2010). Eric performed research
in the lab after his junior year at Pioneer High School in Ann Arbor. His
work in the lab focused on properties of the minimize-deep-coalescence
algortithm for species tree inference. After graduating from Pioneer in
2011, Eric enrolled as an undergraduate at Brown University.
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Past rotation students and extended visitors
Anastasia Wolff, Biology master's student, Ecole Normale
Superieure (Feb 2010 - Jun 2010)
Brian Metzger, UMich Ecology & Evolutionary Biology (Sep 2009 - Oct 2009)
Ethan Jewett, UMich Bioinformatics (May 2009 - Aug 2009)
Chaolong Wang, UMich Bioinformatics (Jan 2009 - Apr 2009)
Simina Boca, Johns Hopkins Biostatistics (Jun 2008 - Aug 2008; Jun
2007 - Aug 2007)
Zach Szpiech, UMich Bioinformatics (Jan 2008 - Apr 2008)
Mike DeGiorgio, UMich Bioinformatics (Apr 2007 - Aug 2007)
Conner Sandefur, UMich Bioinformatics (Jan 2007 - Apr 2007)
Jenna VanLiere, UMich Bioinformatics (Apr 2006 - Jun 2006)
Justin Van Klein, UMich Bioinformatics (Sep 2005 - Dec 2005)
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