FURTHER INFO
Genetic Analysis Tools
Affymetrix, Inc. – High-density Oligonucleotide GeneChip® Technology Background
Affymetrix GeneChip® Plasmodium/Anopheles Genome Array – Product literature
Fodor, S.P., Rava, R.P., Huang, X.C., Pease, A.C., Holmes, C.P., and Adams, C.L. (1993). Multiplexed biochemical assays with biological chips. Nature 364, 555-556.
Fodor, S.P., Read, J.L., Pirrung, M.C., Stryer, L., Lu, A.T., and Solas, D. (1991). Light-directed, spatially addressable parallel chemical synthesis. Science 251, 767-773.
Illumina, Inc. – BeadArray Technology Background
Oliphant, A., Barker, D.L., Stuelpnagel, J.R., and Chee, M.S. (2002). BeadArray technology: enabling an accurate, cost-effective approach to high-throughput genotyping. BioTechniques Suppl, 56-58, 60-51.
Steemers, F.J., and Gunderson, K.L. (2007). Whole genome genotyping technologies on the BeadArray platform. Biotechnology journal 2, 41-49.
Malaria Research and Reference Reagent Resource Center
National Institute of Allergy and Infectious Diseases
Dr. Martin John Rogers, Parasite Biology/ Parasite Genomics Program Officer
Email: JRogers@niaid.nih.gov
Malaria Genome Mapping and Discovery Research
University of California San Francisco - DeRisi Laboratory
The Malaria Genome and Beyond – Nature Publishing Group
Bozdech, Z., Llinas, M., Pulliam, B.L., Wong, E.D., Zhu, J., and DeRisi, J.L. (2003). The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum. PLoS biology 1, E5.
Gardner, M.J., Hall, N., Fung, E., White, O., Berriman, M., Hyman, R.W., Carlton, J.M., Pain, A., Nelson, K.E., Bowman, S., et al. (2002). Genome sequence of the human malaria parasite Plasmodium falciparum. Nature 419, 498-511.
Kidgell, C., Volkman, S.K., Daily, J., Borevitz, J.O., Plouffe, D., Zhou, Y., Johnson, J.R., Le Roch, K., Sarr, O., Ndir, O., et al. (2006). A systematic map of genetic variation in Plasmodium falciparum. PLoS pathogens 2, e57.
Le Roch, K.G., Zhou, Y., Blair, P.L., Grainger, M., Moch, J.K., Haynes, J.D., De La Vega, P., Holder, A.A., Batalov, S., Carucci, D.J., et al. (2003). Discovery of gene function by expression profiling of the malaria parasite life cycle. Science 301, 1503-1508.
Volkman, S.K., Sabeti, P.C., DeCaprio, D., Neafsey, D.E., Schaffner, S.F., Milner, D.A., Jr., Daily, J.P., Sarr, O., Ndiaye, D., Ndir, O., et al. (2007). A genome-wide map of diversity in Plasmodium falciparum. Nature genetics 39, 113-119.
Harvard School of Public Health
Dr. Sarah Volkman, Research Scientist
Email: svolkman@hsph.harvard.edu
National Institute of Allergy and Infectious Diseases
Dr. Karen Hayton, Laboratory of Malaria and Vector Research, Malaria Genetics Section
Email: KHayton@niaid.nih.gov
Diagnostic Tools and Markers
Mabey, D., Peeling, R.W., Ustianowski, A., and Perkins, M.D. (2004). Diagnostics for the developing world. Nat Rev Microbiol 2, 231-240.
Foundation for Innovative New Diagnostics
Dr. Mark Perkins, Chief Scientific Officer
Email: mark.perkins@finddiagnostics.org
Surveillance and Epidemiology of Drug Resistance
Global Atlas of Infectious Disease – Anti-infective Drug Resistance Maps
World Health Organization, World Malaria Report, 2005
Laufer, M.K., Thesing, P.C., Eddington, N.D., Masonga, R., Dzinjalamala, F.K., Takala, S.L., Taylor, T.E., and Plowe, C.V. (2006). Return of chloroquine antimalarial efficacy in Malawi. The New England journal of medicine 355, 1959-1966.