Published or accepted for publication: 

1. Criddle, C. S., P. L. McCarty, C. M. Elliott, and J. F. Barker, 1986. Reduction of hexachloroethane to tetrachloroethylene in groundwater. J. Contaminant Hydrology 1: 133-142.

2. Vogel, T. M., C. S. Criddle, and P. L. McCarty, 1987. Transformations of halogenated aliphatic compounds. Environmental Science & Technology 8 (21): 722-736.

3. Criddle, C. S., J. T. DeWitt, D. Grbic-Galic , and P. L. McCarty, 1990. Transformation of carbon tetrachloride by Pseudomonas sp. strain KC under denitrification conditions. Applied and Environmental Microbiology. 56 (11): 3240-3246.

4. Criddle, C. S., J. T. DeWitt, and P. L. McCarty, 1990. Reductive dehalogenation of carbon tetrachloride by Escherichia coli k-12. Applied and Environmental Microbiology. 56 (11): 3247-3254.

5. Criddle, C. S. and P. L. McCarty, 1991. Electrolytic model system for reductive dehalogenation in aqueous environments. Environmental Science & Technology. 25 (5): 973-978.

6. Criddle, C. S., 1993. The kinetics of cometabolism. Biotechnology and Bioengineering 41 (11): 1048-1056.

7. Chang, M. K., T. C. Voice, and C. S. Criddle, 1993. Kinetics of competitive inhibition and cometabolism in the biodegradation of benzene, toluene, and p-xylene by two Pseudomonas isolates. Biotechnology and Bioengineering 41 (11): 1057-1065.

8. Tatara, G., M. Dybas, and C. S. Criddle, 1993. Effects of medium and trace metals on the kinetics of carbon tetrachloride transformation by Pseudomonas sp. strain KC. Applied Environ. Microbiol. 59 (7): 2126-2131.

9. Chang, W.-K. and C. S. Criddle, 1995. Biotransformation of HCFC-22, HCFC-142b, HCFC-123, and HFC-134a by methanotrophic mixed culture MM1. Biodegradation, 6: 1-9.

10. Dybas, M. , G. Tatara, and C. S. Criddle, 1995. Localization and characterization of the carbon tetrachloride transformation activity of Pseudomonas sp. strain KC. Applied Environ. Microbiol. 61 (2): 758-762.

11. Wu, M. M., C. S. Criddle, and R. F. Hickey, 1995. Mass transfer and temperature effects on substrate utilization in brewery granules. Biotechnology and Bioengineering 46: 465-475.

12. Mayotte, T., M. Dybas, and C. S. Criddle, 1996. Bench-scale evaluation of bioaugmentation to remediate carbon tetrachloride-contaminated aquifer materials. Ground Water 34 (2): 358-367.

13. Shih, C., M. E. Davey, J. Zhou, J. M. Tiedje, C. S. Criddle, 1996. Effects of phenol feeding pattern on microbial community structure and cometabolism of trichloroethylene. Applied Environ. Microbiol. 62 (8): 2953-2960.

14. Xing, J., C. Criddle. R. Hickey, 1997. Adaptive shifts in anaerobic community structure in response to long-term periodic substrate perturbations. Microbial Ecology 33,50-58.

15. Xing, J., C. Criddle, and R. Hickey, 1997. Effects of long-term substrate perturbation on an anaerobic community. Water Research 31 (9): 2195-2204.

16. Key, B., R. Howell, and C. S. Criddle, 1997. Fluorinated organics in the biosphere. Environ. Science and Technol.31 (9): 2445-2454.

17. Chang, W.-K. and C. S. Criddle, 1997. Experimental evaluation of a model for cometabolism: prediction of simultaneous degradation of trichloroethylene and methane by a methanotrophic mixed culture. Biotechnology and Bioengineering 56 (5): 492-501.

18. Zhao, X., K. Doh, C. S. Criddle, and T. C. Voice, 1997. Accumulation of metabolic intermediates during shock loads in biological fluidized bed reactors. J. Environmental Engineering 123 (12): 1185-1193.

19. Key, B., R. Howell, and C. S. Criddle, 1998. Defluorination of organofluorine sulfur compounds by Pseudomonas sp. strain D2. Environ. Science and Technol.32: 2283-2287.

20. Dybas, M. J., M. Barcelona, S. Bezborodnikov, S. Davies, L. Forney, O. Kawka, T. Mayotte, L. Sepulveda-Torres, K. Smalla, M. Sneathen, J. Tiedje, T. Voice, D. Wiggert, M. E. Witt and C. S. Criddle, 1998. Pilot-scale evaluation of bioaugmentation for in-situ remediation of a carbon tetrachloride-contaminated aquifer. Environ. Science and Technol.32 (22): 3598-3611.

21. Sepulveda-Torres, L., N. Rajendran, M. Dybas, and C. S. Criddle, 1999. Generation and initial characterization of Pseudomonas stutzeri KC mutants with impaired ability to degrade carbon tetrachloride. Archives of Microbiology 171 (6): 424-429.

22. Fernandez, A. S. Huang, S. Seston, J. Xing, R. Hickey, C. Criddle, and J. Tiedje, 1999. How stable is stable? Function and community composition. Applied Environ. Microbiol. 65 (8): 3690-3696.

23. Witt, M. E., M. J. Dybas, R. M. Worden, and C. S. Criddle, 1999. Motility-enhanced bioremediation of carbon tetrachloride-contaminated aquifer sediments. Environ. Science and Technol.33: 2958-2964.

24. Witt, M. E., M. J. Dybas, D. C. Wiggert, and C. S. Criddle, 1999. Use of bioaugmentation for continuous removal of carbon tetrachloride in model aquifer columns. J. of Environmental Engineering Science. 16 (6): 475-485.

25. Hyndman, D. W., M. J. Dybas, L. Forney, R. Heine, T. Mayotte, M. S. Phanikumar, G. Tatara, J. Tiedje, T. Voice, R. Wallace, D. Wiggert, X. Zhao, and C. S. Criddle, 2000. Hydraulic characterization and design of a full-scale biocurtain, Ground Water 38(3): 462-474.

26. Hashsham, S., A. Fernandez, S. Dollhopf, F. Dazzo, J. Tiedje, R. Hickey, and C. Criddle, 2000. Parallel processing of substrate correlates with greater functional stability in methanogenic bioreactor communities perturbed by glucose, Applied Environ. Microbiol. 66 (9): 4050-4057.

27. Fernandez, A., S. Hashsham, S. L. Dollhopf, L. Raskin O. Glagoleva, F. B. Dazzo, R. F. Hickey, and F. Dazzo, C. Criddle and J. Tiedje. 2000. Flexible community structure correlates with stable community function in methanogenic bioreactor communities perturbed by glucose, Applied Environ. Microbiol. 66 (9): 4058-4067.

28. Dohlhopf, S. L., S. A. Hashsham, F. Dazzo, R. F. Hickey, C. S. Criddle, and J. M. Tiedje. 2001. The impact of fermentative organisms on carbon flow in methanogenic systems under constant low substrate conditions, Appl. Microbiol Biotechnol. 56: 531-538.

29. Sepulveda-Torres, L. D., J. Zhou, C. Guasp, J. Lallucat, D. Knaebel, J. L. Plank, and C. S. Criddle, 2001. Pseudomonas sp. strain KC represents a new gemnovar within Pseudomonas stutzeri, International Journal of Systematic and Evolutionary. Microbiology 51: 2013-2019.

30. Sepulveda-Torres, L., A. Huang, H. Kim, and C. S. Criddle, 2002. Analysis of regulatory elements and genes required for carbon tetrachloride degradation in Pseudomonas stutzeri strain KC. J. Molecular Microbiology and Biotechnology 4: 151-161.

31. Phanikumar, M. S., D. W. Hyndman, D. C. Wiggert, M. J. Dybas, M. Witt, and C. S. Criddle, 2002. Simulation of microbial transport and carbon tetrachloride biodegradation in intermittently-fed aquifer columns. Water Resources Research 4, 1-13.

32. Dybas, M. J. D. W. Hyndman, R. Heine, K. Linning, J. Tiedje, T. Voice, R. Wallace, D. Wiggert, X. Zhao, R. Artuz, and C. S. Criddle, 2002. Development, operation, and long-term performance of a full-scale biocurtain utilizing bioaugmentation. Environ. Science and Technol 36: 3635-3644.

33. Phanikumar, M. S., D. W. Hyndman, and C. S. Criddle, 2002. Biocurtain design using reactive transport models. Ground Water Monitoring and Remediation 23: 1-11.

34. Crosby, L. D., and C. S. Criddle, 2003. Understanding systematic error in microbial community analysis techniques as a result of ribosomal RNA (rrn) operon copy number. BioTechniques 34: 790-803.

35. Middleton, S. M., R. Bencheikh-Latmani, M.R. Mackey, M. H. Ellisman, B. M. Tebo, and C. S. Criddle, 2003. Cometabolism of Cr(VI) by Shewanella oneidensis MR-1 produces cell-associated reduced chromium and inhibits growth. Bioengineering and Biotechnology. 83 (6): 627-637

36. Ward, M. J., Q. S. Fu, K. Rhoads, C. H. Yeung, A. M. Spormann, and C. S. Criddle, 2003. A derivative of the menaquinone precursor 1,4-dihydroxy-2-naphthoate is involved in the reductive transformation of carbon tetrachloride by Shewanella oneidensis MR-1. Applied Microbiology and Biotechnology. 63: 551-577.

37. Ayala-del-Rio, H. L., S. J. Callister, C. S. Criddle, and J. M. Tiedje, 2004. Correspondence between community structure and function during succession in phenol- and phenol-plus-trichloroethene-fed sequencing batch reactors. Applied Environ. Microbiol.  70: 4950-4960.

38. Wu, W., B. Gu, M. W. Fields, M. Gentile, Y-K. Ku, H. Yan, S. Tiquias, T. Yan, J. Nyman, J. Zhou, P. M. Jardine, and C. S. Criddle. 2005. Reduction of uranium(VI) by denitrifying biomass. Bioremediation Journal  9(1):1-13

39. Higgins, C. P., J. A. Fields, C. S. Criddle, and R. G. Luthy. 2005.  Perfluorochemicals in sediments and domestic sludge. Environ. Science and Technology 39: 3946-56.

40. Gu, B., W. Wu, M. W. Fields, M. A. Ginder-Vogel, H. Yan, S. Fendorf, C. S. Criddle, and P. M. Jardine, 2005. Bioreduction of uranium in a contaminated soil column.  Environ. Science and Technology 39:4841-4847.

41. Nyman, J. L., T. L. Marsh, M. Ginder-Vogel, M. Gentile, S. Fendorf, and C. S. Criddle.  2005. Heterogeneous response to biostimulation for U(VI) reduction in replicated sediment microcosms.  J. Biodegradation 16:1-14.

42. Benchaeikh-Latmani, R., S. M. Williams, L. Haucke, C. S. Criddle, L. Wu, J. Zhou, and B. M. Tebo. 2005.  Global transcription profiling of Shewanella oneidensis MR-1 during Cr(VI) and U(VI) reduction. Applied Environ. Microbiol.  71(11): 7453-7460

43. Fields, M. W., T. Yan, S.-K. Rhee, S. L. Carroll, P. M. Jardine,  D. B. Watson, C. S. Criddle, and  J. Zhou.  2005.  Impacts on microbial communities and cultivable isolates from groundwater contaminated with high levels of nitric acid-bearing uranium waste. FEMS Microbial Ecology 53:417-428.

44. Luo, J., Cirpka, O.A., Wu, W-M., Fienen, M.N., Jardine, P.M., Mehlhorn, T.L., Watson, D.B., Criddle, C.S., Kitanidis, P.K. 2005.  Mass-transfer limitations for nitrate removal in a uranium-contaminated aquifer.Environ. Sci. Technol. 39(21), 8453-8459.

45. Hwang, C., W.-M.Wu, T. Gentry, J. Carley, S.L. Carroll, C. Schadt, D. Watson, P.M. Jardine, J. Zhou, R.F. Hickey, C.S. Criddle, and M.W. Fields. 2006. Changes in microbial community structure correlate with stressed operating conditions during start-up of a field-scale denitrifying fluidized bed reactor. Applied Microbiology and Biotechnology 71:748-760.

46. Luo, J., W-M. Wu, M. N. Fienen, P. M. Jardine, T. L. Mehlhorn, D. B. Watson, O. A. Cirpka, C. S. Criddle, and P. K. Kitanidis. 2006. A nested cell approach for in situ remediation. Groundwater 44: 266-274.

47. Luo, J., Cirpka, O.A., Fienen, M.N., Wu, W-M., Mehlhorn, T.L., Carley, J., Jardine, P.M.,  Criddle, C.S., Kitanidis, P.K. 2006. A parametric transfer function methodology for analyzing reactive transport in nonuniform flow. J. Contam. Hydrol. 83(1-2): 27-41.

48. Fields, M.W., C.E. Bagwell, S.L. Carroll, T. Yan, X. Liu, D.B. Watson, P.M. Jardine, C. S. Criddle, T. Hazen, and J. Zhou,. 2006. Phylogenetic and functional biomarkers as indicators of bacterial community responses to mixed-waste contamination. Environ. Sci. Technol. 40 (8): 2601-2607.

49. Ginder-Vogel, M, C. Criddle, and S. Fendorf, 2006. Thermodynamic constraints on biogenic UO2 oxidation by Fe(III)-(hydr)oxides. Environ. Sci. Technol. 40(11): 3544-3550.

50. Wu, W., J. Carley, M. Fienen, T. Mehlhorn, K. Lowe, J. Nyman, J. Luo, M. E. Gentile, R. Rajan, D. Wagner, R. F. Hickey, B. Gu, D.  Watson, O. A. Cirpka, P. K. Kitanidis, P. M. Jardine, and C. S. Criddle. 2006. Pilot-scale bioremedation of uranium in a highly contaminated aquifer I: conditioning of a treatment zone. Environ. Sci. Technol. 40 (12): 3978-3985.

51. Wu, W., J. Carley, T. Gentry, M. A. Ginder-Vogel, M. Fienen, T. Mehlhorn, H. Yan, S. Carroll, J. Nyman, J. Luo, M. E. Gentile, M. W. Fields, R. F. Hickey, D.
Watson, O. A. Cirpka, S. Fendorf, J. Zhou, P. Kitanidis, P. M. Jardine, and C. S. Criddle.  2006. Pilot-scale bioremediation of uranium in a highly contaminated aquifer II: evidence of U(VI) reduction and geochemical control of U(VI) bioavailability. Environ. Sci. Technol. 40 (12): 3986-3995.*

52. Gentile, M., T. Yan, S.M. Tiquia, M.W. Fields, J. Nyman, J. Zhou, and C.S. Criddle. 2006. Stability in a denitrifying fluidized bed reactor. Microbial Ecology 52 (2): 311-321.

53. Park, H.-D., G. F. Wells, H. Bae, C. S. Criddle, and C. A. Francis.  2006.  Occurrence of ammonia oxidizing archaea in wastewater treatment plant bioreactors. Applied Environ. Microbiology 72(8): 5643-5647.

54. Tang, C. Y., Q. S. Fu, A. P. Robertson, C. S. Criddle, and J. O. Leckie. 2006.  Use of reverse osmosis membranes to remove perfluorooctane sulfonate (PFOS) from semiconductor wastewater. Environ. Sci. Technol.  40(23): 7343 – 7349.

55. Gentile, M. E., C. M. Jessup, J. L. Nyman, and C. S. Criddle, 2007.  Correlation of functional instability and community dynamics in denitrifying dispersed growth reactors. Applied Environ. Microbiol. 73(3): 680-690.

56. Crosby, L. D. and C. S. Criddle. 2007.  Gene capture and random amplification for quantitative recovery of homologous genes. Molecular & Cellular Probes 21(2):140-147.

57. Nyman, J., M. Gentile, and C. S. Criddle, 2007.  Sulfate requirement for growth of U(VI)-reducing organisms in an ethanol-fed enrichment. Bioremediation Journal 1:21-32.

58. Luo, J., Wu, W.-M., Carley, J., Ruan, C., Gu, B., Jardines, P.M., Criddle, C.S., and P.K. Kitanidis, 2007.  Hydraulic performance analysis of a multiple injection-extraction well system.  J. Hydrol. 336:294-302.

59.  Luo, J., Weber, F.-A., O. A. Cirpka, W.-M. Wu, J. L. Nyman, J. Carley, P. M. Jardine, C. S. Criddle, P. K. Kitanidis. 2007.  Modeling in-situ uranium(VI) bioreduction by sulfate-reducing bacteria.  J. Contam. Hydrol. 92:129-148.

60.  He, Z., T. J. Gentry, C. W. Schadt, L. Wu, J.  Liebich, S. C. Chong, Z. Huang, W. Wu, B. Gu, P. Jardine, C. Criddle, and J. Zhou. 2007. GeoChip: A comprehensive microarray for investigating biogeochemical, ecological, and environmental processes. The ISME Journal 1:67-77.

61. Wu, W., J. Carley, J. Luo,  M. A. Ginder-Vogel,  E. Cardenas, M. B. Leigh, C. Hwang, S. D. Kelly, C. Ruan,  L. Wu, J. Van Nostrand, T. Gentry, K. Lowe, T. Mehlhorn,  S. Carroll, W. Lou,. W. Fields, B. Gu, D. Watson,  K. M. Kemner, T. Marsh, J. Tiedje, J. Zhou, S. Fendorf, P. K. Kitanidis, P. M. Jardine, and C. S. Criddle.  2007.  In-situ bioreduction of uranium (VI) to submicromolar levels and reoxidation by dissolved oxygen. Environ. Sci. Technol.  41: 5716-5723.

Work summarized in References 50, 51, and 61 was highlighted in the January, 2008, issue of US EPA “Technology News and Trends”: http://www.cluin.org/products/newsltrs/tnandt/view.cfm?issue=0108.cfm#3

62. Nyman, J., H.-I. Wu, M. Gentile, and C. S. Criddle, 2007. Inhibition of a U(VI)- and sulfate-reducing consortia by U(VI). Environ. Sci. Technol. 41: 6528-6533.

63. Luo, W., W.-M. Wu, T. Yan, C. S. Criddle, P. M. Jardine, J. Zhou, and B. Gu.  2007.  Influence of bicarbonate, sulfate, and electron donors on biological reduction of uranium and microbial community composition. Applied Microbiol. and Biotech.  77(3): 713-721.

64. Amos, B. K., Y. Sung, K. E. Fletcher, T. J. Gentry, W.-M. Wu, C. S. Criddle, J. Zhou, and F. E. Löffler. 2007. Detection and quantification of Geobacter lovleyi strain SZ: implications for bioremediation at tetrachloroethene- (PCE-) and uranium-impacted sites.  Applied Environ. Microbiol.  73(21): 6898-6904.

65. Gentile, M. E., J. L. Nyman, and C. S. Criddle.  2007.  Correlation of patterns of denitrification instability in replicated bioreactor communities with shifts in the relative abundance and known denitrification patterns of specific populations. The ISME Journal 1: 714-728.

66. Boonchayaanant, B., P. K. Kitanidis, and C. S. Criddle. 2008. Growth and cometabolic reduction kinetics of a uranium- and sulfate-reducing Desulfovibrio/Clostridia mixed culture: temperature effects. Biotech. and Bioengr. 99(5): 1107-1119.

67. Kelly, S.D., K.M. Kemner, J. Carley, C. S. Criddle, D. Phillips, P.M. Jardine, T.L. Marsh, D. Watson, and W.-M. Wu, 2008. Speciation of uranium within sediments before and after in situ bioreduction. Environ. Sci. Technol. 42(5):1558-1564.

68. Rhoads, K. R., E. M.-L. Janssen, R. Luthy, and C. S. Criddle. 2008. Aerobic biotransformation and fate of ethyl perfluorooctane sulfonamide ethanol (N-EtFOSE) in activated sludge. Environ. Sci. Technol. 42(8):2873-2878.

69. Luo, J., W.-M.Wu, J. Carley, M. N. Fienen, H. Cheng,  D. Watson, C. S. Criddle, P. M. Jardine, and P. K. Kitanidis, 2008.  Estimating first-order reaction rate coefficient for transport with nonequilibrium linear mass transfer in heterogeneous media. J. Contam. Hydrol. 98:50-60.

70.  Cardenas, E., W.-M. Wu, M. B. Leigh, J. Carley, S. Carroll, T. Gentry, J. Luo, D. Watson, B. Gu, M. Ginder-Vogel, P. K. Kitanidis, P. M. Jardine, J. Zhou, C. S. Criddle, Terence L. Marsh and J. M. Tiedje, 2008. Microbial communities in contaminated sediments associated with bioremediation of uranium to submicromolar levels. Applied Environ. Microbiol. 74(12): 3718-3729.

71. Hwang, C., W.-M.Wu, T.J. Gentry, J. Carley, S.L. Carroll, D. Watson, P.M. Jardine, J. Zhou, C.S. Criddle, and M.W. Fields, 2008. Bacterial community succession during in-situ bioremediation of U(VI): spatial similarities along controlled flow paths. The ISME Journal 3: 47-64.

72.  Fu, S., B. Boonchayaanant, W. Tang, B. M. Trost, and C. S. Criddle.  2009.  Simple menaquinones reduce carbon tetrachloride and iron (III). Biodegradation 20(1): 109-16.

73. Zhang, T., Jin, T., Yan, Q.-M., Shao, M.-F., Wells, G., Criddle, C., and H. Fang. 2009. Occurrence of ammonia-oxidizing archaea (AOA) in activated sludges of a laboratory scale reactor and two wastewater treatment plants. J. Applied Microbiology.  Accepted for publication.

74. Wells, G.F., H.-D. Park, C.-H. Yeung, B. Eggleston, C. A. Francis, and C. S. Criddle, 2009. Ammonia-oxidizing communities in a highly aerated full-scale activated sludge bioreactor: betaproteobacterial dynamics and low relative abundance of Crenarchaea. Environmental Microbiology. Accepted for publication.

75. Van Nostrand, J. D., W-M. Wu, L. Wu, Y. Deng, J. Carley, S. Carroll, Z. He, B. Gu, J. Luo, C. S. Criddle, D. B. Watson, P. M. Jardine, J. M. Tiedje, T. C. Hazen, and J. Zhou. 2009. GeoChip-based analysis of functional microbial communities in a bioreduced uranium-contaminated aquifer during reoxidation by oxygen. Environmental Microbiology. Accepted for publication.

76. Wong, P. C. Y., Kwon, Y.-N. and C. S. Criddle. 2009. Use of atomic force microscopy and fractal geometry to characterize the roughness of nano-, micro-, and ultrafiltration membranes.  J. Membrane Science. Accepted for publication.

77. Boonchayaanant, B., B. Gu, M. E. Ortiz, and C. S. Criddle. 2009. Can microbially-generated hydrogen sulfide account for the rates of U(VI) reduction by a sulfate-reducing bacterium? Biodegradation. Accepted for publication.

78. Boonchayaanant, B., D. Nayak, X. Du, and C. S. Criddle.  2009. Uranium reduction and resistance to reoxidation under iron-reducing and sulfate-reducing conditions.  Water Research.  Accepted for publication.

Updated July 15, 2009