Transcriptional profiling of Caulobacter crescentus during growth on complex and minimal medium.

Download the paper through PubMed

Tables from the Paper

•     Table 1:  Amino Acid Biosynthesis and Degradation Genes Differentially Regulated between the Media Tested
•     Table 2:  Genes up in M2G
•     Table 3:  Genes up in M2X
•     Table 4:  Instances of Xylose-related Motif (Version in paper and version with Annotations and Transcription Unit Information)

Supplementary Materials Tables

•     Table S1:  Microarray Data for Transport-Related Genes
•     Table S2:  Differentially Regulated Isozymes
•     Table S3:  Instances of Glucose-related Motif #1
•     Table S4:  Instances of Glucose-related Motif #2
•     Table S5:  Instances of C. crescentus  Xylose-related Motif in Xanthomonas campestris and Xanthomonas  citri

Data

•     Complete Raw Data Set
•     Statistics and Summary Data    

Other Supplementary Material

•     Models for Intergenic Sequence, for Xylose-related Motif, and for Glucose-related Motif #1 and #2
•     Genes whose expression is significantly up or down in PYE, M2X, or M2G that were determined to be cell cycle-regulated in

Laub, M.T., McAdams, H.H., Feldblyum, T., Fraser, C. M., Shapiro, L. Global Analysis of the Genetic Network Controlling a Bacterial Cell Cycle Science 2000 Dec 15; vol. 290, p. 2144-2148.

•     Data Analysis Methods
•     Classifications of Genes into Functional Categories
•     Protocol for RNA Isolation with Trizol (Invitrogen)
•     Primers Used for Microarrays.  The primers are a superset of those used in (Laub et al, 2000).   The complete set is listed here for convenience.   

Contact Information