Dickinson, K., Khokha, M., and J. C. Baker. BMP signaling is necessary and sufficient for endoderm formation in Xenopus. In Preparation.

Chiao, E., Kmet M., Behr B., and J. C. Baker. Derivation of hESCs in chemically defined conditions. In Preparation.

Chiao, E., Wong, W. H., and J. C. Baker. Differentiation and genomic analysis of hESCs into hepatocyte precursors. In Preparation.

Knox, K., and J. C. Baker. Expression profiling reveals novel murine placental hormones and a role for physiologic hypoxia in placental hormone regulation. Submitted, Endocrinology.

Knox, K., and J. C. Baker. Evolution of the mammalian placenta. Submitted, Genome Research.

Mitiku, N., and J. C. Baker. 2007. Genomic analysis of gastrulation and organogenesis in the mouse. Developmental Cell, in press.

Knox, K., and J. C. Baker. 2007. Genomic analysis of the p57Kip2 mouse placenta to identify molecules involved in preterm labor and preeclampsia. Molecular Human Reproduction 13(4): 251-263.

Fletcher, R. B., Baker, J. C., and R. M. Harland. 2006. FGF8 spliceforms mediate early mesoderm and posterior neural tissue formation in Xenopus. Development 133(9): 1703-1714.

Hufton, A., A. Vinayagam, S. Suhai, and J. C. Baker. 2006. Genomic Analysis of Xenopus Organizer Function. BMC Developmental Biology 6: 27-49.

Borchers, A., Y, Fonar, D. Frank, and J. C. Baker. 2006. XNF-ATc3 affects neural convergent extension. Development 133(9): 1745-1755.

Dickinson, K., J. Leonard, and J. C. Baker. 2006. Genomic profiling of Mixer and Sox17 targets during Xenopus endoderm development. Developmental Dynamics 235(2): 368-381.

Chiao, E., J. Leonard, K. Dickinson, and J. C. Baker. 2005. High-throughput functional screen of mouse gastrula cDNA libraries reveals new components of endoderm and mesoderm specification. Genome Research 15: 44-53.

Lu, X., A. G. M. Borchers, C. Jolicoeur, H. Rayburn, J. C. Baker, and M. Tessier-Lavigne. 2004. PTK7/CCK-4 is a novel regulator of planar cell polarity in vertebrates. Nature 430: 93-98.

Pomrehn-Myers, A., Corson, L. B., Rossant, J., and J. C. Baker. 2004. Characterization of Mouse Rsk4 as an Inhibitor of Fibroblast Growth Factor-RAS-Extracellular Signal-Regulated Kinase Signaling. Molecular and Cellular Biology 24(10): 4255-4266.

DeYoung, A. R, J. C. Baker, D. Cado, and A. Winoto. 2003. The orphan steroid receptor Nur77 family member Nor-1 is essential for   early mouse embryogenesis. Journal of Cell Biology 278(47): 47104-47109.

Borchers, A. G. M., A. L. Hufton, A. G. Eldridge, P. K. J. Jackson, R. M. Harland, and J. C. Baker. 2002. The E3 ubiquitin ligase GREUL1 anteriorizes ectoderm during Xenopus development. Developmental Biology 251(2):395-408.

Baker, J. C., R. S. Beddington and R. M. Harland. 1999. Wnt signaling in Xenopus embryos inhibits bmp4 expression and activates neural development. Genes and Development 13(23): 3149-3159.

Das, P., H. Inoue, J. C. Baker, H. Beppu, M. Kawabata, R. M. Harland, K. Miyazono, R. W. Padgett. 1999. Drosophila dSmad2 and Atr-I transmit activin/TGFbeta signals. Genes Cells 4(2): 123-134.

Baker, J. C. and R. M. Harland. 1997. From receptor to nucleus: the Smad pathway. Current Opinion in Genetics and Development 7(4): 467-473.

Baker, J., M. P. Hardy, J. Zhou, C. Bondy, F. Lupu, A. Bellve, and A. Efstratiadis. 1996. Effects of an Igf-1 gene null mutation on mouse reproduction. Molecular Endocrinology 10: 903-918.

Liu, F., A. Hata, J. C. Baker, J. Doody, J. Carcamo, R. M. Harland and J. Massague. 1996. A human Mad protein acting as a BMP-regulated transcriptional activator. Nature 381: 620-623.

Baker, J. C. and R. M. Harland. 1996. A novel mesoderm inducer, Madr2, functions in the activin signal transduction pathway. Genes and Development 10(15): 1880-1889.

Liu, J. P., J. Baker, A. S. Perkins, E. J. Robertson, and A. Efstratiadis. 1993. Mice encoding null mutations of the genes encoding insulin-like growth factor I and type 1 IGF receptor. Cell 75: 59-72.

Baker, J., J. P. Liu, E. J. Robertson, and A. Efstratiadis. 1993. Role of insulin-like growth factors in embryonic and postnatal growth. Cell 75: 73-82.

Thompson, E. W., J. C. Baker, S. A. Kamoss and W. H. Anderson. 1991. The severity of diabetes is a major determinant of myocardial damage in the rat. Proc. Soc. Exp. Biol. Med. 196 (2): 230-233.