Multiscale Systems Biology Collaboration
Freely available software
- openCOBRA toolbox
MATLAB toolbox for constraint-based reconstruction and analysis (COBRA).
Routines for dense and sparse LU factorization.
A primal-dual interior point method for large-scale optimization
with convex objective and linear constraints.
Proximal Newton-type methods for minimizing composite functions
(unconstrained optimization of the sum of smooth and nonsmooth functions).