CELLULAR
NEUROSCIENCE (Psychology 120/Biology 153) [last edited 9/22/2009] 
Tuesday-Thursday1:15-2:30       Room 041, Jordan Hall
Scope of course
Staff
Discussion sections
Background section .........
Mechanics of the course
Exams & Grading
Text 
Web site
Recommendations
Earthquakes!
Notes for Background Section
Simulation Programs
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You need to read this syllabus if you plan to take this course!



Scope of course
    The course is designed to provide a foundation needed for the eventual understanding of the neural basis of behavior and cognition. We will consider data and theories of brain-behavior relationships from research in the neurosciences. Progress in neuroscience requires a detailed knowledge of brain function and so cuts across areas such as neurophysiology, neuroanatomy, and neurochemistry. In the first part of the course we will take a reductionistic approach and focus on the basic element of nervous systems -- the neuron. The objective is to understand the signaling capacities of neurons in terms of cellular mechanisms. In the second part of the course we will take a more integrative approach and consider how we might understand how simple sensory, motor, and learning capacities arise from the operations of  neural networks. We will also consider how hormonal and neural elements interact to produce motivation and emotions.
     The course emphasizes fundamentals. It should give you a solid grounding in the basic operating principles of neural tissue, and let you progress with confidence to more advanced courses. This is not a survey course, although we will touch at least briefly on many areas of current research.

Staff  
name
room
Office hours
telephone
e-mail
Jeff Wine
Jordan 450
T, Th, 2:30-3:30
725-2462
wine@stanford.edu
Aaron Rudin*
Gilbert 334
M, W 5-6
408-472-0960
arudin@stanford.edu
Daniella Furman,   CA
Jordan  (420) room 169
W, Fri 2- 3
240-483-1424
dfurman@stanford.edu
Erlinda Viray  Administrator
Jordan 288
n/a
723-7431 eviray@stanford.edu
 ...........*** ...........***Head Teaching Assistant.  Office hours other than shown can be arranged by appointment.



Discussion sections
The twice-weekly discussion sections have been discontinued. To replace these, you are encouraged to visit the course assistants during their office hours or by appointment.  You are also encouraged to ask questions via email (see email addresses under Staff).  Questions and answers (without identifying the questioner) will be posted on the Web so that all students can have the benefit of the exchange. 


Background section
An extensive handout for the background section is on the web.  After you have enrolled in the course, you can get to that material by clicking here.



Mechanics of the course
Illustrated lectures. A given topic will be covered by both lectures and readings, but the way in which the material is presented will usually differ somewhat.  Different perspectives should make new ideas easier to assimilate. As the course progresses, some topics will be covered only by readings or lectures. That will allow us to cover more ground with only minor loss in depth of understanding.  Lecture notes (unfortunately without most of the visual material) will be available on the web.


Grading.
Grading is based on one midterm and a final exam. The midterm counts for ~1/3 of your grade, the final ~2/3. The final will cover the entire course. Exams are multiple choice and short essay.   Course grading will conform to the norm in many Stanford courses.  Students who are on the distribution, and this is expected to be all students who devote appropriate attention to the assignments, will receive an A or B, with an approximate division of 1/3 and 2/3.  There is one rigid part to this course:  the final exam is only given at the time and date assigned by the university.  No exceptions are made to this policy, so if you don't want to take the exam at the assigned time for some reason (for example, because you have two other exams the same day), please do not take the course.



Text: Eric R. Kandel, James H. Schwartz, Thomas M. Jessell:
Principles of Neural Science, 4th edition (McGraw-Hill)
This is a large, comprehensive text appropriate for a full-year course.  Of the 63 chapters, only 19 are assigned reading for this course.  However, the text costs little more than diluted versions, and can serve as a rich resource for students who have more than a passing interest in neuroscience.   The chapters and parts of chapters to be read are listed in the schedule (these can change, so use the web rather than a printed version) and additional guidance will be given as we proceed.  Chapter numbers in parentheses means you should 'read lightly' as opposed to studying the chapter.  Usually a good method is to start is to read the section headings, and the opening paragraph; also look at the figures and read the figure captions.  If you read something that is also covered or referred to in lecture, that part should be read more carefully.  If you read something that you find interesting, you might guess that your instructors find it interesting too, although this is not a certain guide.

Recommendation letters
    Students who do well in the class often request letters of recommendation.  I am happy to write letters, but I only do so in August of each year, so you should plan accordingly.  Instructions can be found on my teaching page.


Website
The website provides you flexibility in reviewing notes and keeping track of what is going on in the course.  A great advantage of the web is that links provide a convenient method to move around on a site and to switch among related topics.  Attempts in the past to incorporate these webpages with CourseWorks have created unacceptable problems, which is why they are still independent.

The lectures are password protected.  You will be given a password in class.  Passwords are a source of frustration for everyone, and I would like to eliminate them.  However, for a variety of reasons it isn't yet practical to do that.



In the event of an earthquake during class

Palo Alto is Earthquake country.  In the event of an earthquake, you should immediately take cover as best as possible in the auditorium.  Make sure that your head and neck are below the level of the seat backs.  Brace yourself, and wait for the shaking to cease.  After the earthquake has stopped, remain calm and listen to your instructor and teaching assistants for instructions.  In an orderly manner, you will be evacuating the building and moving to the Emergency Assembly Point in the Oval on the north side of Jordan Hall.  Be prepared to assist others who may be injured or need help, and expect aftershocks.

Spend a moment right now determining good places to take cover, and think about several ways in which you might exit the building should an earthquake occur.  It is also a good idea to locate the closest fire extinguisher and first aid kit.  If you have a disability or for any reason might require extra assistance in the event of an earthquake, please let the instructor know so that your needs can be taken into account in our preparations for emergencies.  You are encouraged to review
the Stanford University Environmental Health and Safety Web Site for more information.  If you have further questions about earthquake safety, please don't hesitate to ask your instructor.


If you have trouble viewing web pages try Firefox, which is the browser I use.


Each lecture except the introductory lecture is preceded by an outline.  By clicking on either the outline topic or the pebble in front of it, you can jump to that section of the lecture: use the back button on your browser to return to the index.  There is also a search function on the course outline page that will list all pages that contain the term you are trying to find.

Links also allow you to pursue a topic in greater depth by providing instant access to supplementary material and original articles.  However, that immediately raises the perennial question: "What are we required to know for the exam?"  When a link takes you to material that could be covered on the exam, it will be followed by the sign [required].  However, I hope you find that many of the non-required links take you to material that is useful and interesting.  In many cases, pursuing those links will increase your understanding of the required material.  Links are hidden all over the place in these pages.  For example, in this page the pebbles in the outline are links.

Another advantage of the web is that it makes it easy to revise the material, but that again poses a problem.  Each page has a date indicating when it was last edited.  Make sure you are using the latest version of the web page when you are studying.  To prevent chaos, I stop posting updates to a given page on the day after the lecture that corresponds to that page.  However, updates posted that late will usually be to correct errors.  If there must be an occasional exception to that rule we will call it to your attention.

Please let me know (wine@stanford.edu) about any problems with the pages.  A major problem of which we are fully aware is the lack of graphics in many pages, and the poor quality of some of the graphics we do have.


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