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2006
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Jensen, Lars J., Jensen, Thomas S., de Lichtenberg, Ulrik, Brunak, S., and Bork, Peer (2006). "Co-evolution of transcriptional and post-translational cell-cycle regulation." Nature.
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Haynes, C., Oldfield, C. J., Ji, F., Klitgord, N., Cusick, M. E., Radivojac, P., Uversky, V. N., Vidal, M., and Iakoucheva, L. M. (2006). "Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes.." PLoS Comput Biol, 2.
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Ptacek, Jason and Snyder, Michael (2006). "Charging it up: global analysis of protein phosphorylation.." Trends Genet(52).
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Yu, Haiyuan, Xia, Yu, Trifonov, Valery, and Gerstein, Mark (2006). "Design principles of molecular networks revealed by global comparisons and composite motifs." Genome Biology, 7, R55+.
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Reguly, Teresa, Breitkreutz, Ashton, Boucher, Lorrie, Breitkreutz, Bobby-Joe, Hon, Gary C., Myers, Chad L., Parsons, Ainslie, Friesen, Helena, Oughtred, Rose, Tong, Amy, Stark, Chris, Ho, Yuen, Botstein, David, Andrews, Brenda, Boone, Charles, Troyanskya, Olga G., Ideker, Trey, Dolinski, Kara, Batada, Nizar N., and Tyers, Mike (2006). "Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae." Journal of Biology, 5, 11+.
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Sharan, Roded and Ideker, Trey (2006). "Modeling cellular machinery through biological network comparison." Nature Biotechnology, 24, 427-433.
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Jaimovich, A., Elidan, G., Margalit, H., and Friedman, N. (2006). "Towards an integrated protein-protein interaction network: a relational markov network approach.." J Comput Biol, 13, 145-164.
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Scott, J., Ideker, T., Karp, R. M., and Sharan, R. (2006). "Efficient algorithms for detecting signaling pathways in protein interaction networks.." J Comput Biol, 13, 133-144.
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Krogan, Nevan J., Cagney, Gerard, Yu, Haiyuan, Zhong, Gouqing, Guo, Xinghua, Ignatchenko, Alexandr, Li, Joyce, Pu, Shuye, Datta, Nira, Tikuisis, Aaron P., Punna, Thanuja, Peregrãn-Alvarez, Josã© M., Shales, Michael, Zhang, Xin, Davey, Michael, Robinson, Mark D., Paccanaro, Alberto, Bray, James E., Sheung, Anthony, Beattie, Bryan, Richards, Dawn P., Canadien, Veronica, Lalev, Atanas, Mena, Frank, Wong, Peter, Starostine, Andrei, Canete, Myra M., Vlasblom, James, Wu, Samuel, Orsi, Chris, Collins, Sean R., Chandran, Shamanta, Haw, Robin, Rilstone, Jennifer J., Gandi, Kiran, Thompson, Natalie J., Musso, Gabe, St Onge, Peter, Ghanny, Shaun, Lam, Mandy H. Y., Butland, Gareth, Altaf-Ul, Amin M., Kanaya, Shigehiko, Shilatifard, Ali, O'Shea, Erin, Weissman, Jonathan S., Ingles, James C., Hughes, Timothy R., Parkinson, John, Gerstein, Mark, Wodak, Shoshana J., Emili, Andrew, and Greenblatt, Jack F. (2006). "Global landscape of protein complexes in the yeast Saccharomyces cerevisiae." Nature.
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Campillos, Mónica, von Mering, Christian, Jensen, Lars Juhl J., and Bork, Peer (2006). "Identification and analysis of evolutionarily cohesive functional modules in protein networks.." Genome Res.
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Gavin, Anne-Claude, Aloy, Patrick, Grandi, Paola, Krause, Roland, Boesche, Markus, Marzioch, Martina, Rau, Christina, Jensen, Lars J., Bastuck, Sonja, Dümpelfeld, Birgit, Edelmann, Angela, Heurtier, Marie-Anne, Hoffman, Verena, Hoefert, Christian, Klein, Karin, Hudak, Manuela, Michon, Anne-Marie, Schelder, Malgorzata, Schirle, Markus, Remor, Marita, Rudi, Tatjana, Hooper, Sean, Bauer, Andreas, Bouwmeester, Tewis, Casari, Georg, Drewes, Gerard, Neubauer, Gitte, Rick, Jens M., Kuster, Bernhard, Bork, Peer, Russell, Robert B., and Superti-Furga, Giulio (2006). "Proteome survey reveals modularity of the yeast cell machinery." Nature.
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Li, D., Li, J., Ouyang, S., Wang, J., Wu, S., Wan, P., Zhu, Y., Xu, X., and He, F. (2006). "Protein interaction networks of Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster: large-scale organization and robustness.." Proteomics, 6, 456-461.
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Maciag, Karolina, Altschuler, Steven J., Slack, Michael D., Krogan, Nevan J., Emili, Andrew, Greenblatt, Jack F., Maniatis, Tom, and Wu, Lani F. (2006). "Systems-level analyses identify extensive coupling among gene expression machines." Mol Syst Biol, 2, msb4100045-E1-msb4100045-E14.
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Bandyopadhyay, Sourav, Sharan, Roded, and Ideker, Trey (2006). "Systematic identification of functional orthologs based on protein network comparison." Genome Res., 16(3), 428-435.
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Warner, G. J., Adeleye, Y. A., and Ideker, T. (2006). "Interactome networks: the state of the science.." Genome Biol, 7.
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