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2006
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Ptacek, Jason and Snyder, Michael (2006). "Charging it up: global analysis of protein phosphorylation.." Trends Genet(52).
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Deutscher, David, Meilijson, Isaac, Kupiec, Martin, and Ruppin, Eytan (2006). "Multiple knockout analysis of genetic robustness in the yeast metabolic network." Nature Genetics, 38, 993-998.
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Collins, Sean R., Schuldiner, Maya, Krogan, Nevan J., and Weissman, Jonathan S. (2006). "A strategy for extracting and analyzing large-scale quantitative epistatic interaction data." Genome Biology, 7, R63+.
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Kafri, Ran, Levy, Melissa, and Pilpel, Yitzhak (2006). "The regulatory utilization of genetic redundancy through responsive backup circuits.." Proc Natl Acad Sci U S A.
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Lehner, Ben, Crombie, Catriona, Tischler, Julia, Fortunato, Angelo, and Fraser, Andrew G. (2006). "Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways." Nature Genetics, 38, 896-903.
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He, X. and Zhang, J. (2006). "Transcriptional reprogramming and backup between duplicate genes: is it a genomewide phenomenon?." Genetics, 172, 1363-1367.
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Zhong, W. and Sternberg, P.W. (2006). "Genome-Wide Prediction of C. elegans Genetic Interactions." Science, 311(5766), 1481.
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2005
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Davierwala, Armaity P., Haynes, Jennifer, Li, Zhijian, Brost, Renee L., Robinson, Mark D., Yu, Lisa, Mnaimneh, Sanie, Ding, Huiming, Zhu, Hongwei, Chen, Yiqun, Cheng, Xin, Brown, Grant W., Boone, Charles, Andrews, Brenda J., and Hughes, Timothy R. (2005). "The synthetic genetic interaction spectrum of essential genes." Nat Genet, 37, 1147-1152.
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Kelley, Ryan and Ideker, Trey (2005). "Systematic interpretation of genetic interactions using protein networks." Nature Biotechnology, 23, 561-566.
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Kafri, R., Bar-Even, A., and Pilpel, Y. (2005). "Transcription control reprogramming in genetic backup circuits." Nature Genetics, 37(3), 295-299.
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Qi, Y., Ye, P., and Bader, J.S. (2005). "Genetic interaction motif finding by expectation maximization -- a novel statistical model for inferring gene modules from synthetic lethality." BMC Bioinformatics, 6(1), 288.
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Schuldiner, M., Collins, S.R., Thompson, N.J., Denic, V., Bhamidipati, A., Punna, T., Ihmels, J., Andrews, B., Boone, C., Greenblatt, J.F., and others (2005). "Exploration of the Function and Organization of the Yeast Early Secretory Pathway through an Epistatic Miniarray Profile." Cell, 123(3), 507-519.
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Van Driessche, N., Demsar, J., Booth, E.O., Hill, P., Juvan, P., Zupan, B., Kuspa, A., and Shaulsky, G. (2005). "Epistasis analysis with global transcriptional phenotypes." Nature Genetics, 37, 471-477.
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2004
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Segre, Daniel, Deluna, Alexander, Church, George M., and Kishony, Roy (2004). "Modular epistasis in yeast metabolism." Nature Genetics, 37, 77+.
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Tong, Amy H. Y., Lesage, Guillaume, Bader, Gary D., Ding, Huiming, Xu, Hong, Xin, Xiaofeng, Young, James, Berriz, Gabriel F., Brost, Renee L., Chang, Michael, Chen, Yiqun, Cheng, Xin, Chua, Gordon, Friesen, Helena, Goldberg, Debra S., Haynes, Jennifer, Humphries, Christine, He, Grace, Hussein, Shamiza, Ke, Lizhu, Krogan, Nevan, Li, Zhijian, Levinson, Joshua N., Lu, Hong, Menard, Patrice, Munyana, Christella, Parsons, Ainslie B., Ryan, Owen, Tonikian, Raffi, Roberts, Tania, Sdicu, Anne-Marie, Shapiro, Jesse, Sheikh, Bilal, Suter, Bernhard, Wong, Sharyl L., Zhang, Lan V., Zhu, Hongwei, Burd, Christopher G., Munro, Sean, Sander, Chris, Rine, Jasper, Greenblatt, Jack, Peter, Matthias, Bretscher, Anthony, Bell, Graham, Roth, Frederick P., Brown, Grant W., Andrews, Brenda, Bussey, Howard, and Boone, Charles (2004). "Global Mapping of the Yeast Genetic Interaction Network." Science, 303, 808-813.
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Parsons, A. B., Brost, R. L., Ding, H., Li, Z., Zhang, C., Sheikh, B., Brown, G. W., Kane, P. M., Hughes, T. R., and Boone, C. (2004). "Integration of chemical-genetic and genetic interaction data links bioactive compounds to cellular target pathways.." Nat Biotechnol, 22, 62-69.
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Wong, S.L., Zhang, L.V., Tong, A.H.Y., Li, Z., Goldberg, D.S., King, O.D., Lesage, G., Vidal, M., Andrews, B., Bussey, H., and others (2004). "Combining biological networks to predict genetic interactions." Proceedings of the National Academy of Sciences, 101(44), 15682-15687.
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