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2006
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Chua, G., Morris, Q. D., Sopko, R., Robinson, M. D., Ryan, O., Chan, E. T., Frey, B. J., Andrews, B. J., Boone, C., and Hughes, T. R. (2006). "Identifying transcription factor functions and targets by phenotypic activation.." Proc Natl Acad Sci U S A, 103, 12045-12050.
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Ptacek, Jason and Snyder, Michael (2006). "Charging it up: global analysis of protein phosphorylation.." Trends Genet(52).
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Lehner, Ben, Crombie, Catriona, Tischler, Julia, Fortunato, Angelo, and Fraser, Andrew G. (2006). "Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways." Nature Genetics, 38, 896-903.
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Ho, Su-Wen W., Jona, Ghil, Chen, Christina T L T., Johnston, Mark, and Snyder, Michael (2006). "Linking DNA-binding proteins to their recognition sequences by using protein microarrays.." Proc Natl Acad Sci U S A.
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Krogan, Nevan J., Cagney, Gerard, Yu, Haiyuan, Zhong, Gouqing, Guo, Xinghua, Ignatchenko, Alexandr, Li, Joyce, Pu, Shuye, Datta, Nira, Tikuisis, Aaron P., Punna, Thanuja, Peregrãn-Alvarez, Josã© M., Shales, Michael, Zhang, Xin, Davey, Michael, Robinson, Mark D., Paccanaro, Alberto, Bray, James E., Sheung, Anthony, Beattie, Bryan, Richards, Dawn P., Canadien, Veronica, Lalev, Atanas, Mena, Frank, Wong, Peter, Starostine, Andrei, Canete, Myra M., Vlasblom, James, Wu, Samuel, Orsi, Chris, Collins, Sean R., Chandran, Shamanta, Haw, Robin, Rilstone, Jennifer J., Gandi, Kiran, Thompson, Natalie J., Musso, Gabe, St Onge, Peter, Ghanny, Shaun, Lam, Mandy H. Y., Butland, Gareth, Altaf-Ul, Amin M., Kanaya, Shigehiko, Shilatifard, Ali, O'Shea, Erin, Weissman, Jonathan S., Ingles, James C., Hughes, Timothy R., Parkinson, John, Gerstein, Mark, Wodak, Shoshana J., Emili, Andrew, and Greenblatt, Jack F. (2006). "Global landscape of protein complexes in the yeast Saccharomyces cerevisiae." Nature.
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Sopko, R., Huang, D., Preston, N., Chua, G., Papp, B., Kafadar, K., Snyder, M., Oliver, S. G., Cyert, M., Hughes, T. R., Boone, C., and Andrews, B. (2006). "Mapping pathways and phenotypes by systematic gene overexpression.." Mol Cell, 21, 319-330.
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Gavin, Anne-Claude, Aloy, Patrick, Grandi, Paola, Krause, Roland, Boesche, Markus, Marzioch, Martina, Rau, Christina, Jensen, Lars J., Bastuck, Sonja, Dümpelfeld, Birgit, Edelmann, Angela, Heurtier, Marie-Anne, Hoffman, Verena, Hoefert, Christian, Klein, Karin, Hudak, Manuela, Michon, Anne-Marie, Schelder, Malgorzata, Schirle, Markus, Remor, Marita, Rudi, Tatjana, Hooper, Sean, Bauer, Andreas, Bouwmeester, Tewis, Casari, Georg, Drewes, Gerard, Neubauer, Gitte, Rick, Jens M., Kuster, Bernhard, Bork, Peer, Russell, Robert B., and Superti-Furga, Giulio (2006). "Proteome survey reveals modularity of the yeast cell machinery." Nature.
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Keshet, Ilana, Schlesinger, Yeshayahu, Farkash, Shlomit, Rand, Eyal, Hecht, Merav, Segal, Eran, Pikarski, Eli, Young, Richard A., Niveleau, Alain, Cedar, Howard, and Simon, Itamar (2006). "Evidence for an instructive mechanism of de novo methylation in cancer cells." Nature Genetics, 38, 149-153.
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Pokholok, D.K., Zeitlinger, J., Hannett, N.M., Reynolds, D.B., and Young, R.A. (2006). "Activated Signal Transduction Kinases Frequently Occupy Target Genes." Science's STKE, 313, 533.
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Segal, E., Fondufe-Mittendorf, Y., Chen, L., Thastrom, A., Field, Y., Moore, IK, Wang, JP, and Widom, J. (2006). "A genomic code for nucleosome positioning.." Nature.
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2005
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Foat, B. C., Houshmandi, S. S., Olivas, W. M., and Bussemaker, H. J. (2005). "Profiling condition-specific, genome-wide regulation of mRNA stability in yeast.." Proc Natl Acad Sci U S A, 102, 17675-17680.
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Pokholok, D. K., Harbison, C. T., Levine, S., Cole, M., Hannett, N. M., Lee, T. I., Bell, G. W., Walker, K., Rolfe, P. A., Herbolsheimer, E., Zeitlinger, J., Lewitter, F., Gifford, D. K., and Young, R. A. (2005). "Genome-wide map of nucleosome acetylation and methylation in yeast.." Cell, 122, 517-527.
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Yuan, G. C., Liu, Y. J., Dion, M. F., Slack, M. D., Wu, L. F., Altschuler, S. J., and Rando, O. J. (2005). "Genome-scale identification of nucleosome positions in S. cerevisiae.." Science, 309, 626-630.
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Sonnichsen, B., Koski, L. B., Walsh, A., Marschall, P., Neumann, B., Brehm, M., Alleaume, A., Artelt, J., Bettencourt, P., Cassin, E., Hewitson, M., Holz, C., Khan, M., Lazik, S., Martin, C., Nitzsche, B., Ruer, M., Stamford, J., Winzi, M., Heinkel, R., Roder, M., Finell, J., Hantsch, H., Jones, S. J. M., Jones, M., Piano, F., Gunsalus, K. C., Oegema, K., Gonczy, P., Coulson, A., Hyman, A. A., and Echeverri, C. J. (2005). "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans." Nature, 434, 462-469.
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Bernstein, B.E., Kamal, M., Lindblad-Toh, K., Bekiranov, S., Bailey, D.K., Huebert, D.J., McMahon, S., Karlsson, E.K., Kulbokas, E.J., Gingeras, T.R., and others (2005). "Genomic Maps and Comparative Analysis of Histone Modifications in Human and Mouse." Cell, 120(2), 169-181.
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Kim, TH, Barrera, LO, Zheng, M., Qu, C., Singer, MA, Richmond, TA, Wu, Y., Green, RD, and Ren, B. (2005). "A high-resolution map of active promoters in the human genome.." Nature, 436(7052), 876-80.
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Rual, J.F., Venkatesan, K., Hao, T., Hirozane-Kishikawa, T., Dricot, A., Li, N., Berriz, G.F., Gibbons, F.D., Dreze, M., Ayivi-Guedehoussou, N., and others (2005). "Towards a proteome-scale map of the human protein-protein interaction network." Nature, 437(7062), 1173-1178.
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Schuldiner, M., Collins, S.R., Thompson, N.J., Denic, V., Bhamidipati, A., Punna, T., Ihmels, J., Andrews, B., Boone, C., Greenblatt, J.F., and others (2005). "Exploration of the Function and Organization of the Yeast Early Secretory Pathway through an Epistatic Miniarray Profile." Cell, 123(3), 507-519.
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2004
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Aloy, P., Böttcher, B., Ceulemans, H., Leutwein, C., Mellwig, C., Fischer, S., Gavin, A. C., Bork, P., Superti-Furga, G., Serrano, L., and Russell, R. B. (2004). "Structure-based assembly of protein complexes in yeast.." Science, 303, 2026-2029.
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Tong, Amy H. Y., Lesage, Guillaume, Bader, Gary D., Ding, Huiming, Xu, Hong, Xin, Xiaofeng, Young, James, Berriz, Gabriel F., Brost, Renee L., Chang, Michael, Chen, Yiqun, Cheng, Xin, Chua, Gordon, Friesen, Helena, Goldberg, Debra S., Haynes, Jennifer, Humphries, Christine, He, Grace, Hussein, Shamiza, Ke, Lizhu, Krogan, Nevan, Li, Zhijian, Levinson, Joshua N., Lu, Hong, Menard, Patrice, Munyana, Christella, Parsons, Ainslie B., Ryan, Owen, Tonikian, Raffi, Roberts, Tania, Sdicu, Anne-Marie, Shapiro, Jesse, Sheikh, Bilal, Suter, Bernhard, Wong, Sharyl L., Zhang, Lan V., Zhu, Hongwei, Burd, Christopher G., Munro, Sean, Sander, Chris, Rine, Jasper, Greenblatt, Jack, Peter, Matthias, Bretscher, Anthony, Bell, Graham, Roth, Frederick P., Brown, Grant W., Andrews, Brenda, Bussey, Howard, and Boone, Charles (2004). "Global Mapping of the Yeast Genetic Interaction Network." Science, 303, 808-813.
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Kurdistani, S.K., Tavazoie, S., and Grunstein, M. (2004). "Mapping Global Histone Acetylation Patterns to Gene Expression." Cell, 117, 721-733.
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Morley, M., Molony, C.M., Weber, T.M., Devlin, J.L., Ewens, K.G., Spielman, R.S., and Cheung, V.G. (2004). "Genetic analysis of genome-wide variation in human gene expression." Nature, 430, 743-747.
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Harbison, Christopher T., Gordon, Benjamin D., Lee, Tong I., Rinaldi, Nicola J., Macisaac, Kenzie D., Danford, Timothy W., Hannett, Nancy M., Tagne, Jean-Bosco, Reynolds, David B., Yoo, Jane, Jennings, Ezra G., Zeitlinger, Julia, Pokholok, Dmitry K., Kellis, Manolis, Rolfe, Alex P., Takusagawa, Ken T., Lander, Eric S., Gifford, David K., Fraenkel, Ernest, and Young, Richard A. (2004). "Transcriptional regulatory code of a eukaryotic genome." Nature, 431, 99-104.
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2003
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Kamath, R. S., Fraser, A. G., Dong, Y., Poulin, G., Durbin, R., Gotta, M., Kanapin, A., Le Bot, N., Moreno, S., Sohrmann, M., Welchman, D. P., Zipperlen, P., and Ahringer, J. (2003). "Systematic functional analysis of the Caenorhabditis elegans genome using RNAi.." Nature, 421, 231-237.
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2002
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Lee, T. I., Rinaldi, N. J., Robert, F., Odom, D. T., Bar-Joseph, Z., Gerber, G. K., Hannett, N. M., Harbison, C. T., Thompson, C. M., Simon, I., Zeitlinger, J., Jennings, E. G., Murray, H. L., Gordon, D. B., Ren, B., Wyrick, J. J., Tagne, J. B., Volkert, T. L., Fraenkel, E., Gifford, D. K., and Young, R. A. (2002). "Transcriptional regulatory networks in Saccharomyces cerevisiae.." Science, 298, 799-804.
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Giaever, G., Chu, A. M., Ni, L., Connelly, C., Riles, L., Véronneau, S., Dow, S., Lucau-Danila, A., Anderson, K., André, B., Arkin, A. P., Astromoff, A., El-Bakkoury, M., Bangham, R., Benito, R., Brachat, S., Campanaro, S., Curtiss, M., Davis, K., Deutschbauer, A., Entian, K. D., Flaherty, P., Foury, F., Garfinkel, D. J., Gerstein, M., Gotte, D., Güldener, U., Hegemann, J. H., Hempel, S., Herman, Z., Jaramillo, D. F., Kelly, D. E., Kelly, S. L., Kötter, P., LaBonte, D., Lamb, D. C., Lan, N., Liang, H., Liao, H., Liu, L., Luo, C., Lussier, M., Mao, R., Menard, P., Ooi, S. L., Revuelta, J. L., Roberts, C. J., Rose, M., Ross-Macdonald, P., Scherens, B., Schimmack, G., Shafer, B., Shoemaker, D. D., Sookhai-Mahadeo, S., Storms, R. K., Strathern, J. N., Valle, G., Voet, M., Volckaert, G., Wang, C. Y., Ward, T. R., Wilhelmy, J., Winzeler, E. A., Yang, Y., Yen, G., Youngman, E., Yu, K., Bussey, H., Boeke, J. D., Snyder, M., Philippsen, P., Davis, R. W., and Johnston, M. (2002). "Functional profiling of the Saccharomyces cerevisiae genome.." Nature, 418, 387-391.
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2000
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| J |
Roberts, C. J., Nelson, B., Marton, M. J., Stoughton, R., Meyer, M. R., Bennett, H. A., He, Y. D., Dai, H., Walker, W. L., Hughes, T. R., Tyers, M., Boone, C., and Friend, S. H. (2000). "Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles.." Science, 287, 873-880.
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Li, S., Armstrong, C.M., Bertin, N., Ge, H., Milstein, S., Boxem, M., Vidalain, P.O., Han, J.D.J., Chesneau, A., Hao, T., and others (). "A Map of the Interactome Network of the Metazoan C. elegans." Science's STKE, 303(5657), 540-543.
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Ptacek, Jason, Devgan, Geeta, Michaud, Gregory, Zhu, Heng, Zhu, Xiaowei, Fasolo, Joseph, Guo, Hong, Jona, Ghil, Breitkreutz, Ashton, Sopko, Richelle, Mccartney, Rhonda R., Schmidt, Martin C., Rachidi, Najma, Lee, Soo-Jung, Mah, Angie S., Meng, Lihao, Stark, Michael J. R., Stern, David F., De Virgilio, Claudio, Tyers, Mike, Andrews, Brenda, Gerstein, Mark, Schweitzer, Barry, Predki, Paul F., and Snyder, Michael (). "Global analysis of protein phosphorylation in yeast." Nature, 438, 679-684.
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